| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1420 |
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| Symbol | |
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| ID | 4078050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1514770 |
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| End bp | 1516857 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006730 |
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| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
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| Protein accession | YP_613415 |
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| Protein GI | 99081261 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
[TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0353718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.112708 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC TCGCAGACTA TGACGGCCCG ATCCTTGAAA TCGACAAGCT GTCGATCTCA
TTTTTTACAA GGCTGCGCGA GATTCCAGCG GTGATGGACT TTTCGGTCGC CGTGCAACCG
GGCGAAGCGG TTGGGCTGGT CGGAGAATCC GGCTGCGGCA AATCCACCGT GGCGTTGGGC
GTCATGCAGG ATCTGGGCAA GAACGGGCGC ATCGTCGGTG GTTCGATCAA GTTCAAGGGC
CGTGATCTCG CGGAGATGAG CGCCGAGGAG CTGCGAGATG TGCGCGGCAA CGAGATCGCG
ATGATCTATC AGGAGCCGAT GGCCTCGCTC AATCCGGCGA TGAAAATCGG CAAGCAACTG
ATGGAAGTGC CGATGATTCA TGAGGGTGTC AGCGAGAAAG AGGCCTATGA TCGCGCGCTC
GAGGTGGTCA CGGATGTAAA ACTGCCGGAT CCCAAGCGGA TGCTGAATTC CTATCCGCAT
CAGCTCTCGG GCGGGCAGCA GCAGCGGATC GTCATTGCAA TGGCACTGAT GTCCAAGCCT
GCACTCTTGA TCCTCGATGA GCCTACCACC GCACTTGATG TAACTGTTGA GGCCGCCGTG
GTCGAACTGG TCAAGGATCT GGGCAAGAAA TACGGCACCT CAATGCTGTT TATCTCGCAC
AACCTCGGGC TTGTTCTTGA GACTTGTGAC AGGATTTGCG TGATGTATTC CGGTGAGGCG
GTGGAGCGCG GGTCGATTGA GGATGTCTTT GACCACATGC GCCACCCCTA CACGCAGGCC
TTGTTCCGCT CAATTCCCCT GCCGGGCGCC GACAAGAACG CGCGTCCGCT GGTGGCGATC
CCCGGCAACT TTCCCCTGCC CCATGAACGC CCGCGCGGCT GCAACTTTGG CCCACGCTGT
GACTATTTCG AAGCCGGGCG CTGTGATGCA AGCGACATCG CAATGGCGGC GGTGCCGGGC
AATGAACGCC ACCATACCCG CTGTCTGCGC TTTGAAGAAA TCGACTGGAA CGCACCGCTC
GCTCTGGCGG AGCAAACCAG CAAGACAGAG CCCGGGCGGG TTGTGCTCAA GATGGACAAG
CTCAAGAAAT ATTACGAGGT CGCGGCCAAT GCGCTGTTTG GGGGCGGCGC GCGAAAGGTT
GTCAAAGCCA ATGAGACACT GAGCTTTGAG GCGCGCGAAT CCGAGACGCT TGCCATCGTG
GGCGAGTCCG GCTGCGGTAA ATCCACATTT GCCAAGGTAC TGATGGGGCT GGAAACAGCG
ACCGAGGGCG AGATCCTTCT GGACGACCGC AACATCGAGG ACGTGCCGAT CGAGGCGCGG
GATGCAAAGA CCATTTCCGA TGTGCAAATG GTGTTCCAGA ACCCCTTCGA CACGCTCAAT
CCTTCGATGA CGGTCGGGCG GCAGATCATC CGGGCGCTGG AGATCTTTGG CATCGGTGAC
AGCGATGGCG CAAGAAAGCA GCGCATGCTC GAACTTCTGG ATCTGGTGAA GCTGCCACGT
GCCTTTGCCG ACCGGATGCC GCGACAGCTC TCGGGCGGGC AGAAACAGCG GGTTGGTATT
GCCCGTGCCT TTGCCGGGGG CGCGCGGATC GTGGTTGCGG ATGAACCCGT CTCGGCGCTG
GATGTGTCGG TGCAGGCTGC TGTGACCGAT CTCCTGATGG AGATCCAGCG CAATGAGAAG
ACGACCCTGC TCTTTATCAG TCACGATCTC TCGATTGTGC GCTATCTCAG CGATCGGGTG
ATGGTGATGT ATCTCGGTCA TGTGGTCGAG CTTGGCGAAA CCGAGCAGGT GTTCTCACCG
CCCTATCACC CCTATACCGA GGCGCTGTTG TCTGCTGTGC CAATCGCGGA CACATCGGTC
GAAAAGACCC ATATCGTGCT TGAGGGGGAT ATCCCTTCGG CCATGAACCC GCCCTCCGGG
TGCCCGTTTC AGACTCGTTG CCGTTGGAAA TCGAAGGTTC CAGGTGGCCT CTGCGAGGCT
GAGGTGCCGC CCATCCAGAC CCTTGAAAAC GGGCACCAGA TCAAATGCCA TCTGAGCGGC
GAAGTTCTGG AGAGTATGGA GCCGGTCATC AAGATCGCGG CGGAGTGA
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| Protein sequence | MSKLADYDGP ILEIDKLSIS FFTRLREIPA VMDFSVAVQP GEAVGLVGES GCGKSTVALG
VMQDLGKNGR IVGGSIKFKG RDLAEMSAEE LRDVRGNEIA MIYQEPMASL NPAMKIGKQL
MEVPMIHEGV SEKEAYDRAL EVVTDVKLPD PKRMLNSYPH QLSGGQQQRI VIAMALMSKP
ALLILDEPTT ALDVTVEAAV VELVKDLGKK YGTSMLFISH NLGLVLETCD RICVMYSGEA
VERGSIEDVF DHMRHPYTQA LFRSIPLPGA DKNARPLVAI PGNFPLPHER PRGCNFGPRC
DYFEAGRCDA SDIAMAAVPG NERHHTRCLR FEEIDWNAPL ALAEQTSKTE PGRVVLKMDK
LKKYYEVAAN ALFGGGARKV VKANETLSFE ARESETLAIV GESGCGKSTF AKVLMGLETA
TEGEILLDDR NIEDVPIEAR DAKTISDVQM VFQNPFDTLN PSMTVGRQII RALEIFGIGD
SDGARKQRML ELLDLVKLPR AFADRMPRQL SGGQKQRVGI ARAFAGGARI VVADEPVSAL
DVSVQAAVTD LLMEIQRNEK TTLLFISHDL SIVRYLSDRV MVMYLGHVVE LGETEQVFSP
PYHPYTEALL SAVPIADTSV EKTHIVLEGD IPSAMNPPSG CPFQTRCRWK SKVPGGLCEA
EVPPIQTLEN GHQIKCHLSG EVLESMEPVI KIAAE
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