| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1415 |
|---|
| Symbol | miaA |
|---|
| ID | 4078045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1508184 |
|---|
| End bp | 1509050 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638006725 |
|---|
| Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| Protein accession | YP_613410 |
|---|
| Protein GI | 99081256 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.122148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTGGATA TTGATAAAAT CCCAGCTGAT CAGCCCGTGC TGATTGCCGG TCCAACCGCA
TCTGGCAAAT CCGAGCTGGC GCTGCGCATC GCCGAACACA GCGGTGGCGT GATCGTCAAT
GCCGACGCAA GCCAGGTCTA TGACTGCTGG CGGGTTGTGA CCGCGCGCCC CTCGGCAGAA
GACGAATCCC GCGCAGCGCA CGCGCTTTAT GGTCATCTGA GCTATGACAC ACTTTATTCC
GCCGGGCACT GGCTGCGCGA TGTCACACCG CTCTTGAAGG GCACGAAGCG CCCCATCATT
GTTGGGGGCA CCGGGCTTTA TTTTCTGACA CTCACAGAGG GGATGGCAGA TATTCCCGCA
ACCCCGCCCG AAGTGCGCGC CGAAGCGGAT ACTCTGTCGC TCGAAACGCT CGCCGCAGAT
CTCGATCCAG AGACGCGCGC CCGCATCGAC ATGCAGAACC GCGCGCGTGT GCAACGCGCC
TGGGAGGTAT TGCGCGCCAC CGGACGCCCG CTCGCCGAAT GGCAGGATGA CACGCCGCCA
CCGCTCTTGC CTGCCAAGGA TTGCACCGCG CTGGTGGTCG AAGCAGAGCG CGACTGGCTC
GAAACGCGCA TTCGGCGTCG GTTTTCTATG ATGATTGCCC AAGGCGCGCT CGAGGAGGCG
CGCGCCATGC AGGACAGGTA TGATCCCGCG CTTCCCTCCT GCAAAGCGAT CGGCGTCCCG
GAGCTGATGG CGCATCTGAG TGGCGCACTC ACCCTAGAGC AAGCAGAGGA ACGCGCCTCA
GTTGCGACCC GGCAATATGC CAAGCGGCAG CGCACTTGGT TCCGCGCCCG AATGAAATCT
TGGCAGAGGG TCTCGCCGCA GGCATGA
|
|---|
| Protein sequence | MLDIDKIPAD QPVLIAGPTA SGKSELALRI AEHSGGVIVN ADASQVYDCW RVVTARPSAE
DESRAAHALY GHLSYDTLYS AGHWLRDVTP LLKGTKRPII VGGTGLYFLT LTEGMADIPA
TPPEVRAEAD TLSLETLAAD LDPETRARID MQNRARVQRA WEVLRATGRP LAEWQDDTPP
PLLPAKDCTA LVVEAERDWL ETRIRRRFSM MIAQGALEEA RAMQDRYDPA LPSCKAIGVP
ELMAHLSGAL TLEQAEERAS VATRQYAKRQ RTWFRARMKS WQRVSPQA
|
|---|
| |