| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1401 |
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| Symbol | mnmA |
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| ID | 4075894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1494429 |
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| End bp | 1495574 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006711 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_613396 |
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| Protein GI | 99081242 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.249182 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTGG ACAACGAGGC ACCAGTGAAT TCGCTAGGTT TTGCAAAATC TCCCGCCGAG
ACGCGTGTCG TCGTCGCCAT GTCTGGCGGC GTAGATAGCT CTGTTGTGGC AGCATATTTG
GCCGATCAGG GCTATGATGT GGTGGGTGTG ACGTTGCAGC TTTATGATCA CGGCGCGGCG
CTTGCGAAAA AAGGCGCCTG CTGTGCGGGC ATCGATATTC ACGACGCACG CCGTGTCGCA
GAGGAACGCG GCTTTCCGCA CTATGTTCTG GATTATGAGA ACATTTTTAA GGATGCCGTC
ATCGACGAGT TTGCTGACAG CTATCTGGCG GGCGCAACGC CGGTGCCCTG CATCCGCTGT
AATGAGCGTG TGAAGTTCAA GGACCTGCTG GAAACGGCCA AGGATCTGGA GGCTGACTGC
ATGGCAACCG GCCACTATAT CCAGCGCAAG ATGGGGGAAC ACGGGCCGGA GTTGCATTCT
GCCGAGGATG CCAACCGCGA TCAGAGCTAT TTCCTGTTCT CCACCACACC AGAGCAGCTC
GATTTTCTGC GATTCCCGCT AGGCCATTTG CCTTCCAAGG ACGCAACCCG CGAGATGGCG
GCGCAGTATG GCCTGTCGGT TGCTGATAAA CCGGACAGTC AGGATATCTG CTTTGTGCCC
AATGGCGATT ACGCTTCGGT CATCCAGAAA CTGCGCCCTG GTGCTGCTGA ACCCGGACAG
ATCGTGCATG CTGATGGCCG CGTGTTGGGG GAACACAACG GGGTGATTCA CTACACCATC
GGTCAACGCC GCGGTCTTGG CATCGGGGGG CTCAGCGAGC CGCTCTACGT GGTGAAGCTT
GATGTGGACC AGAAACAGGT GATCGTCGGC CCCAAGGAAA TGCTGGCCAC CCGCCGGGTG
CCTGTACGCG AAATCAACTG GTTGGGCGAT GCACCTTTTA CCAGCCGTGA CGAATGGCAC
CTGAGCGTCA AAGTGCGCTC TACCCGCCCG CCGCGCGACG CGATCATCCG CCCGATCTCA
GAGACAGAGG CCGAGGTGGA GCTCTTTTCT GCCGAAGAAG GCATCTCGCC CGGTCAGGCC
TGCGTGTTCT ACGACCCCAA TGGCAGCCGA ATTTATGGCG GCGGTTGGAT CTGGAAGGGT
CAGTAA
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| Protein sequence | MALDNEAPVN SLGFAKSPAE TRVVVAMSGG VDSSVVAAYL ADQGYDVVGV TLQLYDHGAA
LAKKGACCAG IDIHDARRVA EERGFPHYVL DYENIFKDAV IDEFADSYLA GATPVPCIRC
NERVKFKDLL ETAKDLEADC MATGHYIQRK MGEHGPELHS AEDANRDQSY FLFSTTPEQL
DFLRFPLGHL PSKDATREMA AQYGLSVADK PDSQDICFVP NGDYASVIQK LRPGAAEPGQ
IVHADGRVLG EHNGVIHYTI GQRRGLGIGG LSEPLYVVKL DVDQKQVIVG PKEMLATRRV
PVREINWLGD APFTSRDEWH LSVKVRSTRP PRDAIIRPIS ETEAEVELFS AEEGISPGQA
CVFYDPNGSR IYGGGWIWKG Q
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