| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1360 |
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| Symbol | |
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| ID | 4076377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1452860 |
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| End bp | 1455139 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006670 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_613355 |
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| Protein GI | 99081201 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCACAGT TGTCACATAT CCGTTCGGTG TATCTGTGGC TTGGCGCCCT GGATCGCTGG
CGTAAGACGC GCCGCGCGCG CAACATCACC ACCTTGGGGC TGGTGTTGCT CGGGCCCATC
ATGGCTTTGG TGACATTTCT TGTGATCGGT CCCTTTGGCC AGAATGCGAG CTCCCCGGCG
CTGCGCCTGA TCCTGCTCGC TGATCTTGTC TATGTGCTGT CGATTGCAGC GCTGGTCCTC
AGCCAGATCG GACGTCTGAT CGCCGCGCGG CGTGAGAAGT CGGCGGGCTC GCGTCTGCAC
CTGCGATTGA TCGGCGCCTT TGCCTTCCTC GCGCTGGTGC CCACCGTGAC GGTTGCGGTC
TTTGCTGTCT TGACGGTGAA TGTGGGTCTT GAGGGCTGGT TTTCCGAGCG CGTGCGCGAT
GTGATTGGCA ACTCGGTCAA GGCTGCAGAA GCCTATGAAC GCCAGCAGCG TCAGGATCTC
GAACAGGATG CGCTGGCGCT GGCGCGTTTT CTGGATCGAA GCCGGAACAA GAATTTCTTC
ATGAGCGACG GGCAGTTGCG GCAGGTTCTG TCGCAAGGCC AGCTGCAGAT CCAGCGCGGC
CTGCAAGAGG CCTATGTGAT CAATGGGATC GGGGCGATCC AAACCCGCGG GGAGCGATCC
TACGAGTTTG ACTTCGAAGA ACCCACTGAT GCACAGATCG CAGCCGCCGA ATCCGAGGGG
CTGCACCTGA TCCAGGATTG GGACAATAGC GAGTTTCGCG CCCTGGTGCG TCTCAACGCC
TTTGTGGATC GGTATCTCTA CGTCAGTCGT GAAGTCGACG GTGAACTGTT GAACCTGCTC
GACGACACTC AGGAAACTGC GCATCTTTAT CAACAACTCG AGAGTGAGCG CGGGCGGGTG
CTATTTGAAT TCGGCCTGTT GTATCTCGGC TTTGCAGTGA TCCTGATCCT TGCGGCGATG
TGGCTTGGCA TGTGGTTTGC GGAGCGCCTT TCACGCCCGG TCGGGCGCTT GACGGTTGCG
GCGCAGCGTG TGGGCGGTGG CAATCTGAGT GTGCAGGTGG TAGAAGAGAA CGGCGACGAC
GAAATTGCGC AATTAGGGCG TTATTTCAAT CAGATGACGC AGCAACTTCA GGCACAACGT
GAAACCTTGC TACAGAACAC GCATCAGATC GAGCAGCGCC GTCGTCTGTT TGACTCGGTG
CTGTCGTCGG TGACCTCTGG CGTTGTGGGG CTTGATGCAA AGGGCTGCGT GACCTTTGTG
AACACCTCGG CCAAGCGCTT GCTGGATTGG CGTGAGGACC AAAAGTCACT TGCACTTGCG
GTGGCCATTC CGGAGTTTGG TCCGCTGTTT GACGATCTCG TCAAAGGCGG CAGCAACAAT
GCCCAGGGTG AGATCAAAGT AACCCGACAA GGGCAGTTGG AGAACCTCCT TGTGCGGATG
TCGCGCCGAC ACGGCGATGA CAATACGCTC GAGGGCTATG TGGTTGCCTT TGACGATGTC
ACCGATCTCG TGAGTGCGCA GCGCATGGCG GCATGGGGTG ACGTGGCGCG CCGGATCGCC
CATGAGATCA AGAACCCGCT CACCCCGATC CAGCTCAGCG CGGAGCGGAT CAAGCGCAAG
TTTGCTCCAA AACTCAGCGA AGAGCAGAGC GATCAACTGC AGTCGATGAC CGATGTTATT
GTGCGTCAAA CCAACGACTT GCGTCGCATC GTTGATGAGT TTTCAAAATT TGCACGGATG
CCGGAACCCG ATCGACACGA AGAAGACCTA GGCGCGCTGG TGCATAGTGC CGTGTTGCTG
CAGCAAGCCG GGCAACCTGA TCTCAAGATC CACGCGCAGA TCCCGGATCA TCCGCTGAAC
GTGGATGTTG ACGCCACAAT GATCGGGCAG GCGCTGACCA ATCTTATCAA GAACGCTGGC
GAAGCCACGG AGACCTTGCG CAAGAAAGGC GTAGAGCCGG GCTACGCGCC GGAGATCCGG
GTCGATGTGA GCAGCGATGA TAGCGGGTTT GTCATTACGA TTGCGGACAA TGGGATCGGC
TTGCCCGCAG ATCGCGCCCG GCTGTTTGAA CCCTATGTCA CCACCCGTGA CGAGGGCACA
GGCCTCGGCC TGCCGATCGT AAAGAAAATT ATCGAAGAGC ATGGTGGCAG TTTGGTGCTG
GAAGACGCGC CCATCTTTGA CGGGATGAGC CACCAAGGCG CAATGGCGGT GATCCGTCTC
CCGGCGCTGG CGCCAGGAAA TGCCGTCCAG AAACAAACTA TAGTAGCAGG GCTGACATGA
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| Protein sequence | MAQLSHIRSV YLWLGALDRW RKTRRARNIT TLGLVLLGPI MALVTFLVIG PFGQNASSPA
LRLILLADLV YVLSIAALVL SQIGRLIAAR REKSAGSRLH LRLIGAFAFL ALVPTVTVAV
FAVLTVNVGL EGWFSERVRD VIGNSVKAAE AYERQQRQDL EQDALALARF LDRSRNKNFF
MSDGQLRQVL SQGQLQIQRG LQEAYVINGI GAIQTRGERS YEFDFEEPTD AQIAAAESEG
LHLIQDWDNS EFRALVRLNA FVDRYLYVSR EVDGELLNLL DDTQETAHLY QQLESERGRV
LFEFGLLYLG FAVILILAAM WLGMWFAERL SRPVGRLTVA AQRVGGGNLS VQVVEENGDD
EIAQLGRYFN QMTQQLQAQR ETLLQNTHQI EQRRRLFDSV LSSVTSGVVG LDAKGCVTFV
NTSAKRLLDW REDQKSLALA VAIPEFGPLF DDLVKGGSNN AQGEIKVTRQ GQLENLLVRM
SRRHGDDNTL EGYVVAFDDV TDLVSAQRMA AWGDVARRIA HEIKNPLTPI QLSAERIKRK
FAPKLSEEQS DQLQSMTDVI VRQTNDLRRI VDEFSKFARM PEPDRHEEDL GALVHSAVLL
QQAGQPDLKI HAQIPDHPLN VDVDATMIGQ ALTNLIKNAG EATETLRKKG VEPGYAPEIR
VDVSSDDSGF VITIADNGIG LPADRARLFE PYVTTRDEGT GLGLPIVKKI IEEHGGSLVL
EDAPIFDGMS HQGAMAVIRL PALAPGNAVQ KQTIVAGLT
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