| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1349 |
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| Symbol | |
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| ID | 4076366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1437358 |
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| End bp | 1440807 |
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| Gene Length | 3450 bp |
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| Protein Length | 1149 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006659 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_613344 |
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| Protein GI | 99081190 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAGC AATCCGTCGT AATGGGGGGC GCACCCGAGG GGTATGACGC GCGCCTGGTT
CTGAAAGAAA TGGCGCGAAG CGCCGGCCCG GTGCTGCATA TCGCCCGCGA TGACAAGCGG
CTTGAAGCCA TGCGCGCGGC TTTGCGGTTC TTTGCCCCAG AGATTCCGGT GGTGATCTTC
CCCGGCTGGG ATTGTCTGCC TTATGACCGT GTCTCGCCCA ATGCTGATAT TTCCGCTGCG
CGCATGGCGA CCCTTGCGGC GCTGGTGCAC GGGTTGCCGG ACCAGTTCAT CCTGCTCACC
ACGCTGAATG CCGCCATGCA ACGCGTCCCT GCGCGCGAGG TTTTGAAAGA AGCCGCATTC
TCCGCGCGGG TGAACTCCAG AATTGATGAA GATGCGTTGC GTAAGTTCCT GGTGCGTATG
GGGTTCTCCC AAAGCCCAAC GGTGATGGAA CCCGGCGACT ACGCCATTCG CGGCGGCATC
ATCGACATCT TTCCGCCCGG CGAAAGCGGG CCGGTTCGGC TTGATCTCTT TGGCGACACG
CTTGATGGCG CGCGCCGGTT TGATCCCGCC ACCCAGCGCA CCACCGAAAA GCTCGAGGTG
GTCGAGCTTG CGCCGGTTTC CGAGGTGATC CTTGATGAGG CCGCGATCAC CCGGTTTCGA
CAGAATTACC GCATAGAGTT CGGCGCGGCC GGCAGTGATG ATCCGCTTTA TGAGGCCGTA
AGTGCAGGGC GCAAACATCA AGGCATGGAG CATTGGTTGC CGTTTTTTCA TGAGCGGCTT
GAGACCCTGT TTGACTATAT GCCCGATGCA TCGGTCACGC TGGACGATCA GCTGACCCCG
GCGCGTTTGG CGCGATGGGA CAGCATCGTC GATCAATATG AGACCCGCAA AATCGCGATG
GACACCAAGG GGCGCATGGA CTCGGTCTAT AAACCGACCC CGCCACGGCT TCTCTATCTC
GATGACACCA CCTGGGAGAC GCAGATTGAC GCCCATCGCG CGGTTCAATT CCATCCGTTC
CCTCAGGCCT CCGGCCCTGG TGTGGTCGAT GCGGGCGGTC GCATCGGACG CAATTTTTCG
CCCGAGCGCC AGCAGGAAAA CATAAGTCTT TTTGGTGCGT TAGCCGACCA TATCAAAGCG
CGGATGACCA AGGGGCCAGT GGTTGTTGCC TCCTATTCCG AGGGTGCGCG TGAACGCCTG
AGCGGCCTCA TCGAGGATGA GGGCCTCGCC GAGACGATCG CTGTCTCGGA CGGACGGCGG
ATCGGAAAGT CTGGCCTCCA CCTCGCGGTC TGGGCGCTGG AACACGGTTT TGAAGCACCG
GATATGACGG TGATCTCCGA ACAGGACGTG CTTGGGGATC GGCTGATCCG CAAGCCCAAG
CGGCGCCGCA AGGCGGAGAA TTTCCTCACC GAGGCGCAAT CCCTCTCTCC GGGGGATCTT
GTGGTGCATG TCGATCACGG CATTGGCCGC TATATCGGAC TTGAGGTCGT GACTGCCGCG
GGCGCTGCAC ATGAATGTTT GTTGCTGGAA TATGCCGAAG AGTCAAAGCT CTATCTTCCG
GTTGAAAACA TCGAACTGCT GTCCAAATAC GGCCATGACG AAGGCCTCTT GGATAAGCTC
GGAGGCGGTG CCTGGCAGGC CAAGAAAGCC CGCCTCAAGG AGCGCATCCG CGAGATGGCG
GATCGCTTGA TCCGCATTGC CGCTGAGCGC GCCTTGCGCA AAGCGCCTGC GATGGATCCG
CCGCCGCATG CCTGGGAAGA GTTCTCCGCC CGTTTCCCCT ATCAGGAAAC CGACGATCAG
CTGCGCGCCA TCGAAGATGT AATTAGCGAC CTCAACTCGG GTCAGCCGAT GGATCGTCTG
ATCTGCGGCG ATGTTGGCTT TGGCAAGACC GAAGTGGCCA TGCGCGCCGC ATTCGTGGCG
GCAATGTCCG GCCTTCAGGT CGCGATTGTT GCGCCGACCA CATTGCTCGC CCGTCAGCAC
GCTGCGGCTT TCAAAGAGAG GTTCCGTGGA TTTCCTCTCG AAGTCAGACA GTTGTCGCGC
TTTGTGACTT CAAAAGAGGC TAGCCAGACA CGCGAAGGCA TGGCCAAGGG CACGGTCGAC
ATCGTTGTGG GGACCCATGC GCTATTGGCC AAGAATATCC GCTTTCAGAA CCTTGGGCTG
TTGATCATCG ACGAGGAGCA GCATTTTGGT GTGGCCCACA AAGAGCGCCT AAAACAGCTG
CGATCCGACA TCCATGTGCT GACGCTCACC GCAACCCCGA TCCCGCGGAC ACTTCAACTC
AGCCTGACAG GGGTTCGGGA TCTCTCGATT ATTGGCACGC CACCAGTGGA TCGTCTCGCG
ATCCGTACCT ATGTGACCGA GTTTGACGCG ATCACCATTC GCGAAGCACT GCTACGCGAG
CACTACCGGG GCGGGCAGAG CTTTTATGTG GTGCCGCGGA TTTCCGATCT GCCCGAGATC
GAAGCCTTCC TTCAGGAGCA ACTGCCGGAG CTGTCCTATG TGGTGGCGAA TGGGCAGATG
GCCGCCGGTG AACTCGATGA CCGGATGAAC GCCTTTTATG ACGGCAAGTA CGATATTCTT
CTGGCGACCA CGATTGTTGA GTCCGGGCTG GATATTCCCA CCGCTAACAC AATGGTTGTG
CATCGCGCCG ATATGTTTGG ACTGGCGCAG CTCTATCAGA TCCGTGGACG TGTGGGGCGC
TCCAAAACCC GCGCCTATGC CTATCTGACC ACAAAGCCAC GACAAAGACT CACCGATAGC
GCAGAAAAGC GGCTACGTGT GTTGGGTTCG CTCGACACTC TGGGGGCAGG TTTTACTCTT
GCATCTCAGG ACCTTGACAT CCGCGGTGCA GGGAACCTTC TTGGCGAGGA ACAGTCCGGT
CAGATGCGAG ATGTGGGCTA TGAGCTCTAT CAATCGATGC TGGAAGAGGC GATTGCCAAG
ATCAAATCCG GTGAGGTCGA GGGGCTGGTT GAAGGCGACG ATCAATGGGC GCCGCAGATC
AATCTTGGCG TGCCGGTTCT GATCCCAGAA GCCTATGTGC CGGATCTCGA CGTGCGTCTG
GGCCTATATC GCCGCTTGTC CTCGCTCACA ACCAAAGTTG AACTTGAGGG CTTTGCCGCC
GAGCTGATCG ACCGATTTGG GAAATTACCA AAAGAAGTCA ACACGTTGAT GTTGGTGGTT
CGGATCAAGG CCATGTGCAA GAAGGCCGGG ATTGCCAAGC TCGATGGTGG CCCCAAGGGC
GCGACCATCC AGTTTCACAA CGACAAGTTT GCCTCGCCCC AAGGTCTGGT TGAGTTCATT
CAATCCCAAA ATGGGTTGGC GAAGGTCAAG GACAACAAGA TCGTCGTGCG TCGTGACTGG
CGCAAGGACA GCGACAAGAT CAAAGGGGCC TTTGCCATCG CGCGTGACCT TGCTGAAAAG
ATCATCGCGG AGCGCAAGAA GAACCGCTAG
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| Protein sequence | MSQQSVVMGG APEGYDARLV LKEMARSAGP VLHIARDDKR LEAMRAALRF FAPEIPVVIF
PGWDCLPYDR VSPNADISAA RMATLAALVH GLPDQFILLT TLNAAMQRVP AREVLKEAAF
SARVNSRIDE DALRKFLVRM GFSQSPTVME PGDYAIRGGI IDIFPPGESG PVRLDLFGDT
LDGARRFDPA TQRTTEKLEV VELAPVSEVI LDEAAITRFR QNYRIEFGAA GSDDPLYEAV
SAGRKHQGME HWLPFFHERL ETLFDYMPDA SVTLDDQLTP ARLARWDSIV DQYETRKIAM
DTKGRMDSVY KPTPPRLLYL DDTTWETQID AHRAVQFHPF PQASGPGVVD AGGRIGRNFS
PERQQENISL FGALADHIKA RMTKGPVVVA SYSEGARERL SGLIEDEGLA ETIAVSDGRR
IGKSGLHLAV WALEHGFEAP DMTVISEQDV LGDRLIRKPK RRRKAENFLT EAQSLSPGDL
VVHVDHGIGR YIGLEVVTAA GAAHECLLLE YAEESKLYLP VENIELLSKY GHDEGLLDKL
GGGAWQAKKA RLKERIREMA DRLIRIAAER ALRKAPAMDP PPHAWEEFSA RFPYQETDDQ
LRAIEDVISD LNSGQPMDRL ICGDVGFGKT EVAMRAAFVA AMSGLQVAIV APTTLLARQH
AAAFKERFRG FPLEVRQLSR FVTSKEASQT REGMAKGTVD IVVGTHALLA KNIRFQNLGL
LIIDEEQHFG VAHKERLKQL RSDIHVLTLT ATPIPRTLQL SLTGVRDLSI IGTPPVDRLA
IRTYVTEFDA ITIREALLRE HYRGGQSFYV VPRISDLPEI EAFLQEQLPE LSYVVANGQM
AAGELDDRMN AFYDGKYDIL LATTIVESGL DIPTANTMVV HRADMFGLAQ LYQIRGRVGR
SKTRAYAYLT TKPRQRLTDS AEKRLRVLGS LDTLGAGFTL ASQDLDIRGA GNLLGEEQSG
QMRDVGYELY QSMLEEAIAK IKSGEVEGLV EGDDQWAPQI NLGVPVLIPE AYVPDLDVRL
GLYRRLSSLT TKVELEGFAA ELIDRFGKLP KEVNTLMLVV RIKAMCKKAG IAKLDGGPKG
ATIQFHNDKF ASPQGLVEFI QSQNGLAKVK DNKIVVRRDW RKDSDKIKGA FAIARDLAEK
IIAERKKNR
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