| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1161 |
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| Symbol | |
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| ID | 4075947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1250925 |
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| End bp | 1251590 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638006466 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_613156 |
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| Protein GI | 99081002 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00928122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCCGCT TGATCCGTTT CAACAAACCC TTTGATGTGC TGCCGCAGTT CACCGATCGT
GGCAGCGAGG GCAGCCCGCG CGCAACGCTT AGCGATTATG TTGACTGTCC CGGCGTCTAT
CCCGCAGGGC GTCTGGACCG CGACAGCGAA GGGCTGATGC TGCTCACAGA CAATGGCCGC
TTGCAGGCCT GGATCAGCGA CCCAAAGCAT AAGCTCGAGA AAACCTATTG GGTTCAGGTG
GAAGGCATCC CCACCGAGGA CGCTTTGAAG GCCCTGCGCC AAGGCGTTGA TTTGAAAGAC
GGAATGACAC GCCCCGCAAA GGCGGAACTG ATCTCGGAAC CCGCACAGCT CTGGGCGCGC
ACGCCGCCGA TCCGAGAGCG CAAATCCGTG CCGACCGCTT GGCTCGAACT GAAGATATCC
GAAGGCAAAA ACCGGCAGGT GCGGCGGATG ACGGCCGCTA TGGGCTATCC GACCCTGCGT
CTCATCCGCT ATGCCATTGG CGCCTGGACG CTCGATGGTC TGGCGCAGGG CAAATGGGAC
GATCTTGACC CGCCCCGCGT GCCCGGCCCG CCAAAGCCCG CGGCCAAACC GCATCGCAAG
CATGCCGCAA AACGGCGCGC CACGGCGACA CCTGCCCGCA AGCCCCGGCA GCGCCGCGAC
GGCTAA
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| Protein sequence | MSRLIRFNKP FDVLPQFTDR GSEGSPRATL SDYVDCPGVY PAGRLDRDSE GLMLLTDNGR
LQAWISDPKH KLEKTYWVQV EGIPTEDALK ALRQGVDLKD GMTRPAKAEL ISEPAQLWAR
TPPIRERKSV PTAWLELKIS EGKNRQVRRM TAAMGYPTLR LIRYAIGAWT LDGLAQGKWD
DLDPPRVPGP PKPAAKPHRK HAAKRRATAT PARKPRQRRD G
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