Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1101 |
Symbol | |
ID | 4077808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1181900 |
End bp | 1182772 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638006405 |
Product | 3-hydroxyisobutyrate dehydrogenase |
Protein accession | YP_613096 |
Protein GI | 99080942 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
TIGRFAM ID | [TIGR01692] 3-hydroxyisobutyrate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATCG GATTTATCGG ACTGGGCAAC ATGGGCGGCC CGATGGCGGC CAATCTCGCC AAGGCAGGCC ATAGCGTTAC CGGCTTTGAC ATGGCGGATG TCTCGATCGA AGGCGTCTCC CTCGCCAAGA GCGCGGCCGA GGCCGCAACG GGCGCGGATG TGGTGATCAC CATGCTGCCC AATGGTGACA TCCTGCGCCA TGTCGCCTCC GAGATCATCC CCGCCATGAC CAATGGCGCG GCTTTTGTGG ATTGCTCCAC CGTTGATGTG GACAGCGCCC GCGCGGTGGC GCAACAGGCG GCAGAGGCCG GGCTTCTGGC CGTGGATGCG CCGGTCTCCG GTGGCATCGG TGGGGCTGCG GGCGGCACGC TCACCTTTAT GGCGGGCGGA TCTGAGGAGG CCTTTGCCAA GGCCGCACCG CTCTTTGATA TCATGGGCCA GAAGGCCGTG CATTGCGGCG ACTCCGGCGC CGGTCAGGCC GCCAAGATCT GCAACAACAT GATCCTCGGC GTCACCATGA TCGCCACCTG CGAAGCCTTT GCGCTGGCCG ACAAACTCGG CCTTGATCGC CAGAAGATGT TCGATGTGGT CTCGACCTCC TCAGGCTACA GCTGGACCAT GAACGCCTAT TGCCCCGCAC CCGGCGTCGG CCCGCAGTCC CCCGCCGACA ACGATTACCA GCCGGGCTTT GCCGCCGATT TGATGCTGAA GGACCTGCGC CTGTCGCAGC AGGCCGCCGG CAGCGCCGAT GCCGACACCC CGATGGGCAA ACTGGCCGAA GCGCTCTACA GCCAGTTCGT CGACAAAGAG GACGGCAAGG GCAAGGATTT CTCCGCCATG TTGCCGCGCT TTGAAAAACG CGGCCGCAGC TAG
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Protein sequence | MQIGFIGLGN MGGPMAANLA KAGHSVTGFD MADVSIEGVS LAKSAAEAAT GADVVITMLP NGDILRHVAS EIIPAMTNGA AFVDCSTVDV DSARAVAQQA AEAGLLAVDA PVSGGIGGAA GGTLTFMAGG SEEAFAKAAP LFDIMGQKAV HCGDSGAGQA AKICNNMILG VTMIATCEAF ALADKLGLDR QKMFDVVSTS SGYSWTMNAY CPAPGVGPQS PADNDYQPGF AADLMLKDLR LSQQAAGSAD ADTPMGKLAE ALYSQFVDKE DGKGKDFSAM LPRFEKRGRS
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