| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1028 |
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| Symbol | |
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| ID | 4078540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1103990 |
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| End bp | 1107736 |
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| Gene Length | 3747 bp |
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| Protein Length | 1248 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006332 |
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| Product | signal transduction histidine kinase with CheB and CheR activity |
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| Protein accession | YP_613023 |
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| Protein GI | 99080869 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.507304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAAA ACAACATCTC GCCGCTACAC CCTGCGCAAA CCGGGGCGCA CCGCAAGATC
GGCAAGGTCG ATGAGCGGTT CTACATTGTT GGTGTCGGGG CCTCTGCCGG GGGGCTTGAT
GCCATCAAGC AGCTTCTGGC GCGTGTGCCT GTGGATTTTG CGCATAGTTT CGTGGTCGTT
CAGCACCTGT CGCCGGACTA CAAATCCGTG ATGACTGAAA TCCTCGGGCG AGAGACGCAG
CACAAGGTTG TCGAGGTGTC CGACAACATG CGCGTCGAGC CAAAGCATAT CTATGTCATC
CCACCGGGGG CCAATATCGT CATCCAGGGC ACCGAGGACG ATTTGGATGA TCGTGTGATC
GGATCCAGCG CCGCCCCTTC AGCATCCAAG CCTGTTCATG AGGGGTTGCG GTTCTCGCTT
TTGGCGCCGC AACCGCGCCC GGCGCTGAAC CTGCCGATCG ACATCTTCTT TCGCTCGCTG
GCCGAGGCTG TGGGCAAGCG TGCCATCGGT GTGATCCTGT CAGGTACCGG CTCGGACGGC
AGCCGTGGGT TGCGTTCGAT CAAGGACCGT GAGGGGCTGG TGATCGCGCA GGAGCCCGCC
ACCTGCGGGT TTGACGGGAT GCCGCAACAG GCCATCGCCA CCGGGCTTGT AGATCAGGTG
CTGCAACCTG ATGATATTGT TGGTGAAATA TCCAGGTTTA TCGATTTGCG AGACCGTGGG
ATCTCGGACG TGGACGAGAT TTTCGACGGT GCGCAGGACA GCTTTCGCGC GATCCTGGAA
ACGGTCAGCA AACAGGCCGA GATCGATTTT GCGCTCTACA AGGAGCCGAC TCTGCAGCGC
CGGATCGCCC GGCGTATGGG GTTTCTTGGG CTGAGCAATC TTGAAGATTA CCTGAGCTAT
CTCGGCGAAA ACTCCGGCGA AGTCCAACTC CTCTACCGCG AGTTTCTGGT CGGAGTGACC
AACTTCTTTC GGGATCTGCC AGTCTGGCAG GCGATGGAAA CCCGGGTGCT GGAACGTCTG
TTTGCAGAAG GCGACACTGA TCAGCCTTTG CGGGTGTGGT CGGCGGGCTG CTCCACGGGG
GAAGAGGCCT ATACGCTTGC GATGCTGTTG CAGAAGTTTC GCGACGACAA CCAGATCGAG
CGTGATTTCC GGATCTATGC CACCGATGTG AATGAAAACG CGATCAACAC CGCCAAACAG
GGCATCTATC CCGATCACAC GCTGGAAGAA ATTCCCGAGG CCTATCGCAA CGCGGGATAT
ATCACGCATC ATCCGGGCAC ATTCGCGATC TCGCCCACCA TTCGCAGCCA GATCGTTTTT
GCGGTCCACG ACATTACGCT TGATCCGCCC TATACGCGGA CCGATCTTAT CGTGTGCCGG
AACCTGCTGA TCTATCTCGG CCCCGATGTG CAGGCCAAAG TCATGGTGAA CTTCTCCATG
TCCCTCAGGA TAAACGGCTA TCTGCTGCTG GGCGCGGCAG AGACACCCGG CTCTGACGGG
GTGCGGTTCG AGTATTTCAT GGGCAAGGAG CGTATCTTTC GTAACAAGCG CGTGGCGCGT
GCGGGCAGTG GGCGGGCCAA GCTGGCCACG CAGATGCCAG CCCTTGGGAT GCTGCCGCGA
ACGCGGCGCA TGATGTCCTC AGGTCTGTCA ATCCAGGATG ACCTCAGCGC GCTGTTCCAG
TTTTCCCTAG AGGCTGGCCA GATGTCGATC TGCGTGCTGG ATCAGGGTTC CAATATTCTG
AAAACATTCG GGAATATGCA GACCCTTCTG CATATTCCCG AAGGCGGGTT CTCCACCAAC
ATCTTCGATC TCTGCGATGA TCGTCTGCGT AGTTCCATCG CGCTGGTGGT CCGTGGTGTC
GAGGATCAGA CCACCGCACA GGCCTCGGAT ATGCGTCTGA TCGAGGGTGA CAGCGTGCGA
ACCGTGTCAG TGTCTGCGCG CAAGATCATC TGGGAAGGCC ATGCCTCTGC TGTTGCGCTT
TTTGTGCGGC AGATCACGCA GACCCTGCCC AAAGCGGCGG CCGAGAACAG TGACGAAGAA
CCTCAGATCG AGAGGAGCGC CTATATCGAA CATCTCGAGA GCGAGGTGCG CTCGCTTCAG
GAGATGCTCG GGGTGACGGC GCAGGATCTT GGTGCTTCGA ACGAGGAGTT GCAGGCCGCC
AATGAGGAGT TGATCGCCGC AAACGAGGAG CTGCAGGCCA ACAACGAGGA AACCCAGAGC
ATCAATGAAG AGCTCCATAC GGTGAACAGC GAGAACATTG ATCGCATCGC CGAGCTCGAA
GAGGTGAATG CGGATGTCGA CAACCTGCTG GAGACGGCAG CTCTGGGGAT CTTGTTGCTC
GACACCGATA TGTGCATTCG CCGCTTCAGT GCCGGGGTGA CGCGCTATCT GGATCTCAAA
CACAGCGATC TGGGTCGCCC GCTCGAGAGC TTTGCCACCG CGCTGCTGCC CGAGGCTGTC
ACGCTGCTGG TGGATGATGC CCGGCTGGCG CGGGATCAGG GCGAGGAAAC CCAACGCGAG
CTGCGTCGGC GCGATGGCGG TTTTGTACAG ACCCGCGTGC GCCGCTTTAA CCGCCAGCGC
GGAGACTCGC ATGGGGTGGT GATCACCTTG CTCGACATCA CGGATACCAA ACTGCTCGAG
CAGGAGGCCC GGCGTCAGAG CGAAATCCTG TCCAGTGTGC TGGAGAGCGA GGAATCCGGC
TATTGGGATT GGAATATCCC AGAGGATAAA CTCTATATCA GTCGCCGTTT TGTGGAGTTC
CTGGGCTTTG GCGTCGGGGA ACTGGCGCCA AATTCCTCAG CGTGGCAGGG CCTGATCCAC
AGCGATGACC GACCGCAGTT TCACGAGGCG TATCGGGCAC ATGTGAACGC GCGCGGCGAG
GTGCCCTTCC TGATCGAGGC GCGCTATCTC ACCAAGGAGG GTGAGGAGGT CTGGATCAGG
AGCCGCGGTC AAGTGACCGA TTGGGGGCAG GACCATCGCC CCTTGCGCAT GATCGGCGTT
CACCAGAACA TCAGTGACCT CAGGGCGCGC GAGGATGACA TTGAGAAACG CGCTGATGAC
ATGCGCCGCT TCGCCTATGT TCTGGCGCAT GATCTCAAGC AACCGCTGAA CACCATCGAG
GGCAGCGTTC AGGCGCTCGA CGAGGAACTC CCCAAGACGC TGGACGCCGA TATTCACGAG
CTCATGCGCT TTTTGCAGCA GGGCACGCAG CGGCTTAAAG CGCGGGTGAA TGCGGTTCTG
GACTATGCGC GTTTGCAGGA TCAGACCACC CGGTTTGAAC CCTGTGATCT TGCGCAGATC
ATCGACGCAT GTCTTGTCGA TCTCGAGGAC ACGGTGGCGC AGGCCAATGC GGAAATCGTG
GTCGAGCCTT TGCCCGCTGT ATCTGGCACC CCGGAGCTGC TGGTGCGCCT GATGCGGAAC
CTTCTGAGCA ACGCCTTGAA ATTCCGCGAT CCGGCGCGAC CGTTGAAGAT CACGATTGCC
GCGATCAACG CCCCCTATGG CCGCGTGGGG CTCCGGGTGG ATGATACCGG CATAGGTATC
GCGCCGCAGG ATCGCGCGCG GGTGTTTGAG CTCTTTTCAC GATTGCATGT CGAGTCAGAG
ATCGAAGGCA GCGGCCTTGG TCTGGCGATG TGCGATCAGA TTGTGTCCAT CCACGGTGGG
CAGCTCGAGG TGGTCGAAGC CGAGACCGGC GGCGCCAGCT TCCGTTTCAC CCTACCGGCA
GCCCCTGCCG CCCCAGACGG AGCGTGA
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| Protein sequence | MTENNISPLH PAQTGAHRKI GKVDERFYIV GVGASAGGLD AIKQLLARVP VDFAHSFVVV
QHLSPDYKSV MTEILGRETQ HKVVEVSDNM RVEPKHIYVI PPGANIVIQG TEDDLDDRVI
GSSAAPSASK PVHEGLRFSL LAPQPRPALN LPIDIFFRSL AEAVGKRAIG VILSGTGSDG
SRGLRSIKDR EGLVIAQEPA TCGFDGMPQQ AIATGLVDQV LQPDDIVGEI SRFIDLRDRG
ISDVDEIFDG AQDSFRAILE TVSKQAEIDF ALYKEPTLQR RIARRMGFLG LSNLEDYLSY
LGENSGEVQL LYREFLVGVT NFFRDLPVWQ AMETRVLERL FAEGDTDQPL RVWSAGCSTG
EEAYTLAMLL QKFRDDNQIE RDFRIYATDV NENAINTAKQ GIYPDHTLEE IPEAYRNAGY
ITHHPGTFAI SPTIRSQIVF AVHDITLDPP YTRTDLIVCR NLLIYLGPDV QAKVMVNFSM
SLRINGYLLL GAAETPGSDG VRFEYFMGKE RIFRNKRVAR AGSGRAKLAT QMPALGMLPR
TRRMMSSGLS IQDDLSALFQ FSLEAGQMSI CVLDQGSNIL KTFGNMQTLL HIPEGGFSTN
IFDLCDDRLR SSIALVVRGV EDQTTAQASD MRLIEGDSVR TVSVSARKII WEGHASAVAL
FVRQITQTLP KAAAENSDEE PQIERSAYIE HLESEVRSLQ EMLGVTAQDL GASNEELQAA
NEELIAANEE LQANNEETQS INEELHTVNS ENIDRIAELE EVNADVDNLL ETAALGILLL
DTDMCIRRFS AGVTRYLDLK HSDLGRPLES FATALLPEAV TLLVDDARLA RDQGEETQRE
LRRRDGGFVQ TRVRRFNRQR GDSHGVVITL LDITDTKLLE QEARRQSEIL SSVLESEESG
YWDWNIPEDK LYISRRFVEF LGFGVGELAP NSSAWQGLIH SDDRPQFHEA YRAHVNARGE
VPFLIEARYL TKEGEEVWIR SRGQVTDWGQ DHRPLRMIGV HQNISDLRAR EDDIEKRADD
MRRFAYVLAH DLKQPLNTIE GSVQALDEEL PKTLDADIHE LMRFLQQGTQ RLKARVNAVL
DYARLQDQTT RFEPCDLAQI IDACLVDLED TVAQANAEIV VEPLPAVSGT PELLVRLMRN
LLSNALKFRD PARPLKITIA AINAPYGRVG LRVDDTGIGI APQDRARVFE LFSRLHVESE
IEGSGLGLAM CDQIVSIHGG QLEVVEAETG GASFRFTLPA APAAPDGA
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