Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1003 |
Symbol | |
ID | 4078223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1073620 |
End bp | 1074156 |
Gene Length | 537 bp |
Protein Length | 178 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638006307 |
Product | periplasmic protein thiol |
Protein accession | YP_612998 |
Protein GI | 99080844 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
TIGRFAM ID | [TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0767014 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAGA TCTCTTTGAT GATGGCTATT CCAGTGGTCG TCTTTTCCGG CTTTGTTGGC CTTGCCCTCG TGGGCATGGG CCGCGACGAT CCCGAAAGCC TGCCCTCGGC GCGCGAAGGC AAAGCAGCGC CCTCCGTCGC GCTCAGCGAT TTTCCCGGCA AAGAGAGCTT TGACGACGCC ACCCTGCGCG ACGGCACCGT AAAGCTTGTC AATTACTGGG CGAGCTGGTG TGGCCCCTGC CGCGCCGAAC ACCCGAGCCT GACCGCGCTT TCCGAGGAAG GCGTGCCGAT CTACGGCGTG AACTACAAGG ATCAGCTGGC CAATGCCCAG AGTTTCCTCG AGGAACTCGG CGATCCCTAT GCCGGTGTGG GTCGGGATGA ACAGGGGCGT ATGGCGCTGG ATTGGGGGCT GTATGGCGTG CCCGAAACGT ATGTCATCGA CGGCGACGGC ACGGTGGTTC TGCGCTTTGC CGGGCCGATT ACCAGCCGGG TTCTGGAAGA GACCATTCGC CCCGCCATGG AGCGCGCGGC CCAGTAA
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Protein sequence | MAKISLMMAI PVVVFSGFVG LALVGMGRDD PESLPSAREG KAAPSVALSD FPGKESFDDA TLRDGTVKLV NYWASWCGPC RAEHPSLTAL SEEGVPIYGV NYKDQLANAQ SFLEELGDPY AGVGRDEQGR MALDWGLYGV PETYVIDGDG TVVLRFAGPI TSRVLEETIR PAMERAAQ
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