Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0954 |
Symbol | |
ID | 4077348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1017923 |
End bp | 1019824 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638006257 |
Product | ABC transporter related |
Protein accession | YP_612949 |
Protein GI | 99080795 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTTCG ACATGAGAGA CGCCATGCTC AGGATCGAAA ACATCACTTA TTCCGTCGAA GGCCGCCCCC TTATGGAGGA GGCCTCTGCC AGCATTCCAA CCGGTCACAA GGTTGGCGTT GTCGGACGCA ATGGCACCGG CAAGTCCACG CTGTTCCGCC TGATCCGGGG CGAACTGGCG CTGGAAGGCG GAACAATCAC CCTGCCCTCC AAGGCGCGGA TTGGCGGCGT TGCGCAGGAA GTGCCCTCCT CGGAGGTGTC GCTGATCGAC ACGGTGCTGG CCGCAGATAC CGAACGTGCC GCGCTGATGG CGGAGGCCGA CACCGCAACG GATGGCACCC GGATCGCCGA GATCCAGACC CGTCTGGTGG ATATTGATGC ATGGTCTGCT GAGGCCCGCG CCGCTTCGAT CCTCAAGGGG CTTGGCTTTG ACGATCAGGA TCAGCTGCGT CCCTGTTCTG ACTTTTCGGG CGGCTGGCGC ATGCGGGTGG CCCTTGCAGC GGTCCTGTTT GCGCAGCCCG ACCTGCTGCT CCTCGATGAG CCGACGAACT ACCTCGATCT CGAAGGTGCG CTCTGGCTTG AAAGCTATAT CGCGCGCTAT CCGCACACGG TTCTGATCGT CTCCCACGAC CGCGGGCTTC TCAATCGCGC GGTGAGCGCC ATCCTGCATC TCGAGGATCG CAAGCTCACG CTCTATCAGG GGCCTTACGA CACTTTTGCC GAGACCCGCG CCGCCCGCAT CGCCGTGGCG CAGTCCGAAG CGCAGAAACA GGAAAACCGC CGCGCGCATC TTCAGAGCTT TGTGGATCGC TTCCGCGCCA AGGCCTCCAA GGCCAAGCAG GCCCAATCGC GCCTGAAAAT GATCGAGAAG ATGAAGCCGA TCTCGACCCC GCAAGAAGCA GCGCTGCGTG CCTTCAGCTT TCCCGAACCT GAGGAGATGT CGCCGCCGAT CATCCAGATC GAAGGCGGGA TCACCGGCTA CGGTGATGTG GAGATCTTGC GGCGTCTGAA CCTGCGGATT GATCAGGACG ACCGGATCGC GCTGCTGGGC AAGAACGGTC AGGGCAAATC CACGCTCTCC AAGCTGCTCT CGGACCGGCT GCCTTTGATG GCGGGCAAAA TGGTGCGCTC TTCAAAGCTC AGGATCGGCT ATTTTGCGCA GCATCAGGTG GATGAGCTTT ATATCAATGA GACCCCGCTG GACCATCTGC GCCGCCTGCG CCCTGACGAG CCGCCCGCAA AATGGCGCGC GCGCCTTGCA GGCTTTGGCC TGGGCGCCCA GCAGGCAGAA GTAGAGGTAA AGCGTCTGTC GGGAGGGCAG AAGGCCCGCC TGAGCCTCCT GCTTGCGACC CTTGATGCGC CGCATATGCT GATCCTCGAC GAGCCGACGA ACCACCTCGA CATCGAAAGC CGCGAAGCAT TGGTCGAGGC ACTGACCGCC TATAGCGGCG CGGTCATCCT TGTGAGCCAT GACATGCATC TTCTGAGCAT GGTGGCCGAT CGTCTGTGGC TGGTCTCGGA GGGAACCGTC AAACCCTATG ACGGCGATCT CGACAGCTAT CGCGAGATGC TTCTGGCGCG CGACAAACCC GCCGCCAAGG CCGCAACTGT GGCTGCAAGT GCAGCCGAGA AACGCACTGA GAAACCCAAA CGCGCCAGTC GCGATCAGCT CCTTGCGCTG CGCTCGGAAG TGCGAAAATC CGAGGCGCGG GTGGAAAAAC TCAGCGAAAT GCGCGAAAAA CTGGATGCCA AGCTCGCGGA CCCTGCCCTC TATGAAAGTG GCAAACAGGC CGACATCGAA GTTTGGCAGA AAAAGCATGC CGAGTGCATC GAGGCCTTGG AGCGCGCGGA AGCGATCTGG ATGGACGCGC TGGAAAAACT GGAGCTAGCA GAAACCTCAT GA
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Protein sequence | MPFDMRDAML RIENITYSVE GRPLMEEASA SIPTGHKVGV VGRNGTGKST LFRLIRGELA LEGGTITLPS KARIGGVAQE VPSSEVSLID TVLAADTERA ALMAEADTAT DGTRIAEIQT RLVDIDAWSA EARAASILKG LGFDDQDQLR PCSDFSGGWR MRVALAAVLF AQPDLLLLDE PTNYLDLEGA LWLESYIARY PHTVLIVSHD RGLLNRAVSA ILHLEDRKLT LYQGPYDTFA ETRAARIAVA QSEAQKQENR RAHLQSFVDR FRAKASKAKQ AQSRLKMIEK MKPISTPQEA ALRAFSFPEP EEMSPPIIQI EGGITGYGDV EILRRLNLRI DQDDRIALLG KNGQGKSTLS KLLSDRLPLM AGKMVRSSKL RIGYFAQHQV DELYINETPL DHLRRLRPDE PPAKWRARLA GFGLGAQQAE VEVKRLSGGQ KARLSLLLAT LDAPHMLILD EPTNHLDIES REALVEALTA YSGAVILVSH DMHLLSMVAD RLWLVSEGTV KPYDGDLDSY REMLLARDKP AAKAATVAAS AAEKRTEKPK RASRDQLLAL RSEVRKSEAR VEKLSEMREK LDAKLADPAL YESGKQADIE VWQKKHAECI EALERAEAIW MDALEKLELA ETS
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