| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0769 |
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| Symbol | |
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| ID | 4078081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 823906 |
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| End bp | 825321 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006066 |
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| Product | SSU ribosomal protein S6P modification protein |
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| Protein accession | YP_612764 |
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| Protein GI | 99080610 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
[COG4067] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.974202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.327706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACAG ATGACCCGAA CCAGAACCTA CGTCTAGGCT GGGAGGAATG GGTCAGATTG
CCCGAACTCG GCCTGCCCGC CCTGCGTGCA AAGGTCGATA CCGGCGCTCG GACCTCGGCC
CTTCACGCCA CCGACATCGA GACCTTCGGC CCTGCGAAGG CCCCCAAGGT CCGCTTCACC
GTGCATCCGA TCCCGGGGCG CGATGACCTG CTGATCCCGT GTTCCGCTGC CATCAAAGAC
CGCCGCGAAG TAACATCATC CAATGGCGAT CGCGAGATGC GCTATGTCAT CGAGACCAAC
CTGGAAATCG GCGGTCAGGT CTGGCCGGTG GAAGTCACGC TGACGGATCG GCGCGGCATG
GCGCTGCATA TGCTACTGGG CCGTCAGGCG CTCACGGAGA ATATCTCTGT GGTGCCGTCG
GAACGCTACT GCCAGCCCGA ACTTGACTAT TCGGTCTATG CCACGCCCGC GATCCGAAAG
AAGGCCCCCA ACCGCGCGCT GCGCATTGCA GTTCTGAGCC GCGAAGACAA CTACTCCACC
CGCCGCCTGG TCGAGGAAGG CGAGCGGCGC GGCCATTCGG TTGAGGTGAT CGACACGACG
CGGTGCTACA TGTCGATCAA CGCTCTGGCG CCAGAGATCC ACTATGATGG CAAACGCCTG
CCGCGCTATG ACGCGGTGAT CCCCCGTATC GGCGCCTCGG TCACTCAATA TGGCACCGCT
CTGCTGCGCC AGTTCGAGAC GCTTGGGACC TATTGCGTCA ACGGCAGCGA CGGCATTACT
GCGAGCCGAG ACAAGCTGCA TGCCCATCAG ATGCTGGCCC GCCACAAGAT CGGCATGCCC
GCCACCGCTT TTGCTGCCTC TCCCAAGGAT ACAAATGCCC TGATCGACAT TGTTGGCGGC
GCGCCTTTGA TCGTGAAACT GCTGGAAAGC ACCCAGGGCA AAGGCGTGGT GCTGGCCGAA
ACCAAGAAGG CCGCTGAATC CGTGATCACG GCTTTTCGCG GTCTCAAGGC CAACTTCCTC
GTGCAGCAAT TTGTCAAAGA GGCCGCAGGC GTCGATATTC GTTGCTTTGT AGTTGGCTCC
AAAGTGGTGG CGGCGATGAA ACGCTCCGGC GCGGAGGGCG ACTTCCGCTC CAACCTGCAT
CTGGGCGGGA GCGCGGTTTC AGTGCGTATC ACCAAAGAGG AACGCGCCAC GGCCATCCGC
GCCGCACGCT GCTTTGGCCT TGGTGTTGCA GGCGTTGATC TCTTGCGCTC AGAGACCGGC
CCCAAGGTGC TGGAGGTCAA TTCTTCGCCC GGTCTTGAGG GCATCGAGAA GACGTCAAAG
AAAGACATTG CCGCCCTGAT TCACGACGAG ATCGAAGCCA ATGTCCGTCC CACCCCGCTG
CGCACGCGCA AGGCGCTGGG CGACGCCGCC GAATAG
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| Protein sequence | MSTDDPNQNL RLGWEEWVRL PELGLPALRA KVDTGARTSA LHATDIETFG PAKAPKVRFT
VHPIPGRDDL LIPCSAAIKD RREVTSSNGD REMRYVIETN LEIGGQVWPV EVTLTDRRGM
ALHMLLGRQA LTENISVVPS ERYCQPELDY SVYATPAIRK KAPNRALRIA VLSREDNYST
RRLVEEGERR GHSVEVIDTT RCYMSINALA PEIHYDGKRL PRYDAVIPRI GASVTQYGTA
LLRQFETLGT YCVNGSDGIT ASRDKLHAHQ MLARHKIGMP ATAFAASPKD TNALIDIVGG
APLIVKLLES TQGKGVVLAE TKKAAESVIT AFRGLKANFL VQQFVKEAAG VDIRCFVVGS
KVVAAMKRSG AEGDFRSNLH LGGSAVSVRI TKEERATAIR AARCFGLGVA GVDLLRSETG
PKVLEVNSSP GLEGIEKTSK KDIAALIHDE IEANVRPTPL RTRKALGDAA E
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