| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0768 |
|---|
| Symbol | |
|---|
| ID | 4078080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 822928 |
|---|
| End bp | 823815 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638006065 |
|---|
| Product | SPFH domain-containing protein/band 7 family protein |
|---|
| Protein accession | YP_612763 |
|---|
| Protein GI | 99080609 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.441934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAC AAGACATCAT CAACGCCCTT TCCGGTGGGC TTCTCTATAT CGTGGCGGCG
CTCTTTGTGA TCCTGGTGAT CCTCAAAGGC GTACGCATCG TGCCGCAATC GGAAAAATAT
GTGGTTGAGC GCTTTGGTCG CCTCAAATCC GTACTCGGCC CCGGCATCAA CTTTATCGTT
CCATTTCTGG ATGTTGTGCG CCACAAGGTC TCCATTCTGG AGCGCCAGTT GCCCAACGCC
AGCCAGGATG CGATCACCCG CGACAACGTG CTTGTGGAGA TCGACACCTC GGTCTTTTAC
CGCATTCTTG AGCCTGAAAA GACGGTATAT CGCATTCGCG ACGTGGATGG CGCCATCTCC
ACCACTGTTG CAGGCATCGT ACGCGCCGAG ATCGGCAAGA TGGATCTCGA TGAGGTGCAA
TCCAACCGCT CGCAGCTGAT CGGTGAAATC AAGCGCAGCG TTGAAAGTGC CGTGGACGAC
TGGGGCATCG AAGTGACCCG CGCCGAAATC CTCGACGTGA ACCTTGATCA GGCTACCCGC
GATGCGATGC TGCAGCAACT CAATGCCGAA CGCGCCCGCC GCGCCCAGGT CACCGAGGCC
GAGGGCAAGA AACGCGCAGT CGAGTTGGCG GCAGATGCTG AGCTTTATGC TGCAGAGCAA
ACCGCCAAGG CACGCCGCAT CGAAGCCGAG GCCGAGGCCT TCGCAACCCA GGTGGTCGCG
CAGGCGATTG CCGACAACGG TCTTTCGGCG GCCCAGTATC AGGTCGCTCT CAAGCAGGTT
GAGGCGCTCA ATGCGCTGGG CAATGGCGAT GGCAAACAGA CCATCATCGT GCCTGCTCAG
GCCATCGAGG CATTCGGTGA CGCCTTCAAG ATGCTAAAGG CAAAGTGA
|
|---|
| Protein sequence | MTEQDIINAL SGGLLYIVAA LFVILVILKG VRIVPQSEKY VVERFGRLKS VLGPGINFIV
PFLDVVRHKV SILERQLPNA SQDAITRDNV LVEIDTSVFY RILEPEKTVY RIRDVDGAIS
TTVAGIVRAE IGKMDLDEVQ SNRSQLIGEI KRSVESAVDD WGIEVTRAEI LDVNLDQATR
DAMLQQLNAE RARRAQVTEA EGKKRAVELA ADAELYAAEQ TAKARRIEAE AEAFATQVVA
QAIADNGLSA AQYQVALKQV EALNALGNGD GKQTIIVPAQ AIEAFGDAFK MLKAK
|
|---|
| |