Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0686 |
Symbol | ddl |
ID | 4077353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 734517 |
End bp | 735437 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638005983 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_612681 |
Protein GI | 99080527 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.280639 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000224556 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGGGTGGAG CGAGCGGAAC ACTCCCGAAG GTTGCGATGT TGATGGGTGG CCCCTCGGCC GAGCGCGAGG TGTCTTTGTC GACGGGGCGC GAATGCGCCC GCGCACTCAG AGGACAGGGC TACGAGGTGG TCGAGGTCGA TGCAGGCCCC GACCTTGTAG CGCAACTCAA TGACATCAAA CCGGATGTGG CTTTCAACGC TCTGCATGGG CGTTGGGGAG AAGACGGGTG TGTGCAGGGG CTTCTTGAGT GGCTGCGCAT CCCCTACACC CATTCCGGCG TGCTGGCCTC TGCACTGGCG ATGGACAAGG AGCGCTCCAA GGCGGCCTAT CGTACCGCAG GCCTGCCGGT GGTCGACAGT GTGATCGCCG CCAAAGCAGA CGTGATGGCC CGCCATGTGA TCGCGCCGCC CTATGTGGTG AAGCCTAATA ATGAGGGTTC GTCGGTTGGC ATTTACATCG TTCACGAGGC CACCAACAGC CCGCCGCAGC TCTCTGAAGA GATGCCTGCA CAGGTGATGG TCGAGGCCTA TGCGCCTGGT CGCGAGATGA CAGTGACCGT GATGGGGGAT CGCGCGCTCT GTGTGACCGA CATCCTCACC GATGGCTGGT ACGACTATGA GGCCAAATAT GCCACGGGTG GCTCGCGCCA TGTATTGCCT GCCGAGATCC CGGACGAAAT CGCCGATCTA TGCCATGATT ACGCCCTGCG CGCCCATCAG GTGCTTGGGT GTCGCGGGAT TTCGCGTACG GATTTTCGCT GGGATGAGGC GCGCGGCGCT GATGGGCTGG TGCTGCTTGA AACCAACACG CAACCGGGGA TGACGCCGAC CTCGTTATCG CCTGAACAGG CCGAGCATGT TGGTCTCACA TTCGGGCAAC TGTGCGCCTG GTTGGTGGAG GACGCGTCAT GCGAGCGCTG A
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Protein sequence | MGGASGTLPK VAMLMGGPSA EREVSLSTGR ECARALRGQG YEVVEVDAGP DLVAQLNDIK PDVAFNALHG RWGEDGCVQG LLEWLRIPYT HSGVLASALA MDKERSKAAY RTAGLPVVDS VIAAKADVMA RHVIAPPYVV KPNNEGSSVG IYIVHEATNS PPQLSEEMPA QVMVEAYAPG REMTVTVMGD RALCVTDILT DGWYDYEAKY ATGGSRHVLP AEIPDEIADL CHDYALRAHQ VLGCRGISRT DFRWDEARGA DGLVLLETNT QPGMTPTSLS PEQAEHVGLT FGQLCAWLVE DASCER
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