Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0679 |
Symbol | murD |
ID | 4077287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 726193 |
End bp | 727596 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638005976 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_612674 |
Protein GI | 99080520 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.121752 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCGG TCAAAGGTGT CGCAGGGCAA AACGTGGCTG TGCTGGGGCT TGGGCGCTCG GGGCTCTCTG CGGCGCGGGC CTTGCGCGAA GGCGGGGCAG AGGCGATCTG TTGGGACGAT AACCCCGCTG CACGCGCCAC TGCCGAGGCA GAGGGCTTCA CCTGTCGTGA ATTGACCAAG CAGGGCGCAT TCGATGGCAT CTCCGCCCTC ATCGTGTCGC CCGGGATTGC GCATCTTTAC CCGAAACCCA ATCCGGTTAT CCGGGCTGCC CTGGTGGCGG GTGTGCCGGT GGATAATGAC ATTGGCCTGT TCTTCCGCTC TGTTGCGACC TCGGAGTGGG ACGAGTTTGA CACCGCGCCG AAGGTGATTG CCGTAACGGG CTCAAACGGC AAATCGACGA CGGTTGCCTT GCTGCACCAC ATTCTTGAAC ATGTCGGGCG CAACAGTCAG ATGGCGGGCA ATATCGGGCG CGGGGTGCTG GACATCGACC CACCCGTGGA CGGTGGTGTC GTGGTGCTGG AGCTCTCCTC CTATCAAACC GATCTGGCGC GCGCGCTCAC ACCGGATGTC GCGGTCTTCA CCAATCTGAC GCCGGATCAT CTGGACCGTC ACGCTGGAAT GGGGGGGTAT TTTGCGGCCA AGCGGCGCCT TTTTGCAGAG GGTGGCCCGG ATCGCGCGGT CATCGGAGTT GATGAGGACG AGGGGCTTTT CCTTGCAGGG CAACTGAGCG AAGGCGAGAG CGATGATCGC GTGATCCGCA TCTCAGCGCG CCAGAAGCTC TCGGGCGGGG CAGGGTGGAC CGTCTTTGCT CGCAAGGGGT TCTTGTCGGA GTATCGCAAG GGGCGGCAGG CCGGCTCGAT TGATCTTCGC GACATTCCCG GTCTGCCCGG AGCGCATAAC CATCAGAACG CCTGCGCGGC CTACGCTGCA GCCCGTACGC TTGGGCTGGC GCCGCGGGTG ATCGAGGCGG CGATGCGGAC CTATCCGGGG CTGCCGCACC GCAGCCAGCG CATCGCGGAG GCGGATGGGG TATCTTATGT CAATGACAGC AAGGCCACCA ACGTCGACAG CGCCGCCAAG GCGCTGAGCG CGTTCAAAAA TATCCGCTGG ATCTGCGGCG GCTTGGAAAA GGAAGGCGGG CTTGAGGCGC TGAAAGGTGC CACGGATGAT GTGCTCAAGG CCTATGTGAT CGGCCGCGAG GCGGCGCAAT TTGCCATGCA GCTCGATGTG GAGGCCGAGG TCTGCACCAC CATGGCGCAA GCTGTCTCGC GTGCCATGGC CGAGGCCGGC CCGGGGGAGA CAGTGCTTCT GGCCCCTGCG GCGGCGAGCT TTGATCAATA CGACAGTTTT GAAAAACGCG GTGAGGATTT TATCGCTGAG GTCACGGCGC GCCTGAACGG CTAG
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Protein sequence | MIPVKGVAGQ NVAVLGLGRS GLSAARALRE GGAEAICWDD NPAARATAEA EGFTCRELTK QGAFDGISAL IVSPGIAHLY PKPNPVIRAA LVAGVPVDND IGLFFRSVAT SEWDEFDTAP KVIAVTGSNG KSTTVALLHH ILEHVGRNSQ MAGNIGRGVL DIDPPVDGGV VVLELSSYQT DLARALTPDV AVFTNLTPDH LDRHAGMGGY FAAKRRLFAE GGPDRAVIGV DEDEGLFLAG QLSEGESDDR VIRISARQKL SGGAGWTVFA RKGFLSEYRK GRQAGSIDLR DIPGLPGAHN HQNACAAYAA ARTLGLAPRV IEAAMRTYPG LPHRSQRIAE ADGVSYVNDS KATNVDSAAK ALSAFKNIRW ICGGLEKEGG LEALKGATDD VLKAYVIGRE AAQFAMQLDV EAEVCTTMAQ AVSRAMAEAG PGETVLLAPA AASFDQYDSF EKRGEDFIAE VTARLNG
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