| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0669 |
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| Symbol | |
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| ID | 4077277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 715629 |
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| End bp | 718154 |
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| Gene Length | 2526 bp |
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| Protein Length | 841 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638005966 |
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| Product | ATP-dependent helicase HrpB |
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| Protein accession | YP_612664 |
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| Protein GI | 99080510 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.752531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.345787 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGGC TTCCCATCGA CGACGCGCTT CCTCAATTGA TTTCGGCCCT GCGGGCACGG
GGGCGAGCCG TGTTGGAGGC CCCCCCCGGT GCAGGTAAGA CAACCAAGGT TCCGCTCGCG
ATCCTAGATG CGAAGCTGAC GGAAGGGCGC ATCCTCATGC TCGAGCCGCG CCGCCTCGCC
GCTCGTACGG CAGCGGAACG TATGGCCTCC ACACTTGGTG AACCCGCAGG CCATACCGTT
GGCTACAGGG TGCGCGGCGA GGCCAAGGTT TCCAGATCCA CCCGGATCGA GGTCGTCACC
GAGGGCATTC TGACCCGGAT GCTGCAGTCG GATCCGGACC TGCCGGGCGT GGGAGCCGTG
ATCTTTGACG AGTTTCACGA GCGTTCTCTG AACGGCGATC TCGGGCTGGC CTTCTGCCTT
GAAGTGGCAA GCGCCCTGCG CGACGATCTG CTGCTGCTGG CGATGTCCGC GACGCTCGAC
GCTGCCCCGG TTGCGGCATT GATGAACGCA CCGATTGTGA CCTCGGAGGG GCGCAGTTAT
CCGGTGGAAA CCCGCTGGCT CCCTGCTCCG CTCCCCGCAA AGGCGCGTCG GATCGATGCC
TTGGTGGATC TTGTCGTGCA AGCCGAGGCC GAGACCCGCG ACAAGGATGA TCGCGCGGGC
AGCGGCGGTC TTTTGGTGTT TTTGCCCGGC GAAGGCGAAA TCCGCCGCGC CGCGAGCGCG
CTTGAGCGCC GCCTGCCCGC CGCATGCCAG GTTCGCCCGC TCTTTGGGGC GCTGCCCTTT
GCCGAGCAAC GCGCTGCGAT TGCCCCCGCC ACCGAGGGGC GTAAGGTTGT GCTTGCAACA
TCCATTGCTG AAACCTCGCT CACCATCGAG GATATCCGCG TGGTGGTCGA TATGGGGCAG
GCCCGGCGCG CCCGGTTTGA TCCCGGCGCG GGAATGTCGC GACTTGTGAC AGAGCGCGTC
ACCCGCGCCG AGGCCACTCA ACGCCAGGGG CGCGCAGGTC GCGTGAGCGC GGGCGTCTGC
TATCGTCTCT GGGCACAGGG TGAAGAAGGC GCACTCGCCG CCTACCCCCC GGCCGAAATC
GAGGCGGCGG ATCTCACCAG TCTCGCGCTG GAACTGGCGC TGTGGGGGGC GGAGCCGCAG
GATTTGCCGT TGCTCACGCC ACCGCCTGCG GGCAGCTTTG CCGAGGCGCA GCTGCTTCTG
CAGATGCTCG GCGCCCTCGA TACCAAGATG CGGATTACAG AGCATGGTCG CGCGCTGGCG
CGTCTGCCCT TGCATCCCCG CCTCGCGCAT ATGTTCACCA TCGCAGGCCC CGAGAGCGCA
ACGCTGGCCG CATTGCTGGC CGACCGCGAC CCGTTGCGGG GGGCACCGGT GGATCTGGCG
CTGCGCCTGG AGGCCTTGCA GGATCTGCGC CGTTTTCGCG ACCGCCGCCC CTATGAGGTA
AAAGCCCCCG CGCACCAGGC CATCACTGCC GAGGCAAAGC GTCTCAAGCG CCATCGCGGC
GGGCACGGCA CCGCTGCCCC CAATCCCGTG GACGGACCCG CCGCTCCGCT GTTCCCCGCT
GCCCCGTCCG GCGAGCCTCT CTCGCCTGCC GCAATGGCTG CGCTCGCCTA TCCCGACCGG
GTGGCCCAGC GCCGGAAGGG CGATGATGCA CGTTTTGTGC TCTCCGGGGG CAAGGGGGCT
GTGCTGGACA ACGCTGACCC GCTGGCGGGG GCCTCCTACC TCGTGGTTAC CGACACCGAT
GGCAACCCGC GCGAGGCCAA GATCCGTCAG GCTGCACAGA TCACCCTCGC CGAAATCCGT
GGGCTATTTG GCGATCAGAT CGCGTGGCAA GAGGTCTGCA GCTGGTCCAA ACGGGACCGG
CGCGTGGTCG CGCGCAAACA AGAGCGCTTT GGCGCTCTGG TGCTGGACGA CCGGATCTGG
AAAGATGTCC CGCCTGACGC CGTGGCCCAC GCCATGCTTG ATGGGGTGCG TGACCTGGGC
CTGCGACTCT CGCCTGCAGC GGCGCGTCTT GCAACGCGCG TGGAGCTGCT GCGCGCTGAG
GGACGCGACT TGCCGGATTT CTCCGAGGAG GGCTTGATGG CCAAGCTTGA GGACTGGCTC
TTGCCCATGA TCTCAGGGAT GCGTAGCGAC GCGGACTGGA AGAGCTTTGA CGCCCTCCCC
GCCCTACGTG CTGTCCTGAC GTGGGACCAA ACCCAAATGC TCGACCGCGA TGTGCCCGGC
AGTTTTGTGA CACCACTGGG ACGCAAGATC CCGATCGACT ACGACGGCGA GATCCCCGGG
ATCGCGGTAC GCCTGCAGGA AGTGTTCGGC GTGACCCGCC ATCCCACGGT TGCAGGCGTC
GCGCTGAAGG TCACGCTCTT GTCGCCCGCC CGTCGCCCGA TCCAGATCAC TCGCGATCTG
CCGGGGTTCT GGGCAGGATC ATATGCCGAT GTCCGCAAGG ACATGCGGGC ACAATACCCC
AAACACCCCT GGCCCGAAGA CCCCACAAAG GCGGAGGCAA CCTTGCGGGC GCGACCGCGC
AAATAG
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| Protein sequence | MTRLPIDDAL PQLISALRAR GRAVLEAPPG AGKTTKVPLA ILDAKLTEGR ILMLEPRRLA
ARTAAERMAS TLGEPAGHTV GYRVRGEAKV SRSTRIEVVT EGILTRMLQS DPDLPGVGAV
IFDEFHERSL NGDLGLAFCL EVASALRDDL LLLAMSATLD AAPVAALMNA PIVTSEGRSY
PVETRWLPAP LPAKARRIDA LVDLVVQAEA ETRDKDDRAG SGGLLVFLPG EGEIRRAASA
LERRLPAACQ VRPLFGALPF AEQRAAIAPA TEGRKVVLAT SIAETSLTIE DIRVVVDMGQ
ARRARFDPGA GMSRLVTERV TRAEATQRQG RAGRVSAGVC YRLWAQGEEG ALAAYPPAEI
EAADLTSLAL ELALWGAEPQ DLPLLTPPPA GSFAEAQLLL QMLGALDTKM RITEHGRALA
RLPLHPRLAH MFTIAGPESA TLAALLADRD PLRGAPVDLA LRLEALQDLR RFRDRRPYEV
KAPAHQAITA EAKRLKRHRG GHGTAAPNPV DGPAAPLFPA APSGEPLSPA AMAALAYPDR
VAQRRKGDDA RFVLSGGKGA VLDNADPLAG ASYLVVTDTD GNPREAKIRQ AAQITLAEIR
GLFGDQIAWQ EVCSWSKRDR RVVARKQERF GALVLDDRIW KDVPPDAVAH AMLDGVRDLG
LRLSPAAARL ATRVELLRAE GRDLPDFSEE GLMAKLEDWL LPMISGMRSD ADWKSFDALP
ALRAVLTWDQ TQMLDRDVPG SFVTPLGRKI PIDYDGEIPG IAVRLQEVFG VTRHPTVAGV
ALKVTLLSPA RRPIQITRDL PGFWAGSYAD VRKDMRAQYP KHPWPEDPTK AEATLRARPR
K
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