| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0654 |
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| Symbol | |
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| ID | 4078167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 700651 |
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| End bp | 702408 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005951 |
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| Product | capsule polysaccharide export protein-like |
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| Protein accession | YP_612649 |
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| Protein GI | 99080495 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3524] Capsule polysaccharide export protein |
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| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACGA AACCCAAGGC TAAAAAATTC CGTATCCGCC GCCCGAGCTC GGGAGCTGAA
CAGCCGCAGG CCGCTGCGGC GGCGACCGCT CGCCCGGTGC CTCCGCCGCC CGCACAGGAG
ACCGGACGCG ACCAGCCGCT TGAGATGCAG TCTCAGGTGG AACAGGCTGC AAAGGCTTCT
TCCGCGGGCG ATTTTGCGCC TGCCGCGTCC GACACACCAG CGCGCGCGTC CTCGCCACAG
ATGACGCCAT CCCAGAGCGG CGCCACAACG CCACCGCAGG ATGCATCCGA GGATGTGGGC
TCGACCGATA TTGAAGACAT CAAGCGTGAG GGCCTCACGG GGCGTCAATT GCGCCTCGCC
CGTCGCGTTG CACAAAAGCA CGATCTGCCT GCGACATCGG ATTACGACGC TGTGCGTTTG
CTGCGGCTGC GCGGCATTGA TCCATTCAAA CGCGCCAACA TGCTAGAGCT GGTGGTGCCG
CAAAGCCAAA ACGCAAGCGT GCCCGCGACC CAAGCCCCAC AGGGCGCGCC CAAGCCACAG
ACGCTTCCGC AGACGGTAGA GAAAAGCAAA CCCAGCGCAC CGCCCGCCGA TCATCTGAGC
CCGACCGAGC GACGCAACCG CGAAATTCGC TCCATCCAGC GTGACATCGC GCGACGCCGC
CGCCGTAAAA TGGCGCTCTT GGGGGCGCGG CTCGGGGCCT TTGTTCTGAT CCCTACGCTT
CTGGCAGGGT ACTATTATTA CAAGGTCGCA ACACCGATGT ATGCGTCGCA TTCGGAGTTC
CTTGTTCTCA AAGCCGACAG CACCGGGTCT TCGGGGTTCG GCGGCCTTCT GAGCGGCACG
CAATTTGCCA CCAGCCAGGA TTCCATTGCG GTACAGGCCT ATCTGCAATC CAAGGTCGCG
ATGCGCCGCC TCGACGAAGA GGCCGGATTT CGCGCGCATT TCTCGCAGGA CTGGATCGAC
CCAATTCAGC GACTGGAACC AGACGCCAGC AATGACGACG CCTACAAAAC CTATCAGCGC
AATGTAAAAA TCGGCTATGA TCCCACCGAG GGCGTCATTC GCATGGATGT CTCTGCGGCA
GAACCAGCGG TTGCGGCAGA GTTTTCACGC CGCCTGATTT CCTATGCACA GGAAAACGTG
AACCACCTTT CCGAGCAAAA GCGCGCCGAT CAGGTGGGCG ACGCCGAGGA GGCGCTTGCC
CTTGCAGAGC AGCAACGCCG CGACGCCCAG GCAGAACTTG TGCGCCTGCA GCAGCAAGGG
TCGGTCCTCG ATCCCGAAGG GGTCATTGCC TCGCTGCGCT CCCAGATCAA CACGTTTGAG
CTTCAACTGC AGCAAAAGCG CCTGGAGCTC GCGGCGTTGC AGGACAACCT GCGCCCCAAC
GCCGCCAAGG TCGAAGGCAC TGCCGCAGAC ATCAAACGCC TTGAGGCGCT GATTGCAAAT
CTCAACGAAC GCATGACCGA TGCGTCTCAG GGCGAGAACT CGCTTGCCTC GCTGAGCGTC
AAGATCCAGA TGGCACAAGC GGACCTCGCG ACGCGCGACA TGATGCTGCA ATCCGCCCTG
CAACAGGTCG AACAAACCCG TATGGAGGCA AACCGCCAGG TGCGCTATCT GACAACTGCG
GTCGAGCCGG TTCCCGCCGA CACACCCTCC TCGCCGCGCA AGTTCGAAAA TACGATTTTG
GCTTTCCTGA TCTTTTCCGG TATCTACCTG ATGTGTGCCC TCACGGCATC CATTCTTCGG
GAACAGGTCT CTTCGTAA
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| Protein sequence | MTTKPKAKKF RIRRPSSGAE QPQAAAAATA RPVPPPPAQE TGRDQPLEMQ SQVEQAAKAS
SAGDFAPAAS DTPARASSPQ MTPSQSGATT PPQDASEDVG STDIEDIKRE GLTGRQLRLA
RRVAQKHDLP ATSDYDAVRL LRLRGIDPFK RANMLELVVP QSQNASVPAT QAPQGAPKPQ
TLPQTVEKSK PSAPPADHLS PTERRNREIR SIQRDIARRR RRKMALLGAR LGAFVLIPTL
LAGYYYYKVA TPMYASHSEF LVLKADSTGS SGFGGLLSGT QFATSQDSIA VQAYLQSKVA
MRRLDEEAGF RAHFSQDWID PIQRLEPDAS NDDAYKTYQR NVKIGYDPTE GVIRMDVSAA
EPAVAAEFSR RLISYAQENV NHLSEQKRAD QVGDAEEALA LAEQQRRDAQ AELVRLQQQG
SVLDPEGVIA SLRSQINTFE LQLQQKRLEL AALQDNLRPN AAKVEGTAAD IKRLEALIAN
LNERMTDASQ GENSLASLSV KIQMAQADLA TRDMMLQSAL QQVEQTRMEA NRQVRYLTTA
VEPVPADTPS SPRKFENTIL AFLIFSGIYL MCALTASILR EQVSS
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