Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0560 |
Symbol | |
ID | 4077911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 596251 |
End bp | 597039 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638005857 |
Product | 3-oxoadipate enol-lactonase |
Protein accession | YP_612555 |
Protein GI | 99080401 |
COG category | [R] General function prediction only |
COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
TIGRFAM ID | [TIGR02427] 3-oxoadipate enol-lactonase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.027284 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.123793 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGGGTAG CACGCCTGCA AAACGCCATG CTGCATTGGC GAGAGGACGG CAGCCCGGAT GGCCCGGCAG TGGTCTTTGC CAACTCGCTT GGGACCGATC TGCGGCTATG GGATGCCGTG ATCGCGCGCT TACCACAAAA TCTGCGCCTG ATCCGCTACG ACAAGCGGGG GCACGGCCTG AGTTCCTGCC CTGAGGGGCC TTATTCCATC GACGATCTGG CAGAGGATGC GCTCGAACTC CTGGACTACG CAGGCGTTTC GAGTTGCGTG TTTGTGGGGC TGTCGATTGG CGGCATGATC GGCCAGACCC TCGCAGCCCG CGCTCCGGAT CGGATCTCGG CGTTGGTTCT GTCCAACACT GCCGCTAAGA TGGGTGAGAG GCAGATGTGG CTGGACCGCA TCCAAGCCAT CGAGTCGGGC GGGATTGCCG CGCTTTCGGA TGCGGTCATG GCGCGCTGGT TCGCCCCCGC ATTCCTCGAG ACGGACGCCC ATATCCTCTG GCGGCACATG CTGGAGCGCA CCCCCGAAGC AGGCTACATC GCCAGTTGTC ATGCAATCGC AAACGCTGAT CTGCACGCGC TGACACAAAC CCTGCACCAG CCAACCCTCG GCATCGCTGG CCGTTACGAT GGGGCGAGCC CACCCGCCCT CGTTGAAGCA ACCATCGACC TGATAGAAAA CGCGCGTTTT AATGTGATCG AGGACAGCGG CCATCTGCCC TGTGTCGAAG CCCCGGACGC TTATGCAGGC ATGCTGACGG ATTTCATAAA GGAGCTGGGC CATGTCTGA
|
Protein sequence | MRVARLQNAM LHWREDGSPD GPAVVFANSL GTDLRLWDAV IARLPQNLRL IRYDKRGHGL SSCPEGPYSI DDLAEDALEL LDYAGVSSCV FVGLSIGGMI GQTLAARAPD RISALVLSNT AAKMGERQMW LDRIQAIESG GIAALSDAVM ARWFAPAFLE TDAHILWRHM LERTPEAGYI ASCHAIANAD LHALTQTLHQ PTLGIAGRYD GASPPALVEA TIDLIENARF NVIEDSGHLP CVEAPDAYAG MLTDFIKELG HV
|
| |