Gene TM1040_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0560 
Symbol 
ID4077911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp596251 
End bp597039 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content62% 
IMG OID638005857 
Product3-oxoadipate enol-lactonase 
Protein accessionYP_612555 
Protein GI99080401 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID[TIGR02427] 3-oxoadipate enol-lactonase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.027284 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.123793 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGTAG CACGCCTGCA AAACGCCATG CTGCATTGGC GAGAGGACGG CAGCCCGGAT 
GGCCCGGCAG TGGTCTTTGC CAACTCGCTT GGGACCGATC TGCGGCTATG GGATGCCGTG
ATCGCGCGCT TACCACAAAA TCTGCGCCTG ATCCGCTACG ACAAGCGGGG GCACGGCCTG
AGTTCCTGCC CTGAGGGGCC TTATTCCATC GACGATCTGG CAGAGGATGC GCTCGAACTC
CTGGACTACG CAGGCGTTTC GAGTTGCGTG TTTGTGGGGC TGTCGATTGG CGGCATGATC
GGCCAGACCC TCGCAGCCCG CGCTCCGGAT CGGATCTCGG CGTTGGTTCT GTCCAACACT
GCCGCTAAGA TGGGTGAGAG GCAGATGTGG CTGGACCGCA TCCAAGCCAT CGAGTCGGGC
GGGATTGCCG CGCTTTCGGA TGCGGTCATG GCGCGCTGGT TCGCCCCCGC ATTCCTCGAG
ACGGACGCCC ATATCCTCTG GCGGCACATG CTGGAGCGCA CCCCCGAAGC AGGCTACATC
GCCAGTTGTC ATGCAATCGC AAACGCTGAT CTGCACGCGC TGACACAAAC CCTGCACCAG
CCAACCCTCG GCATCGCTGG CCGTTACGAT GGGGCGAGCC CACCCGCCCT CGTTGAAGCA
ACCATCGACC TGATAGAAAA CGCGCGTTTT AATGTGATCG AGGACAGCGG CCATCTGCCC
TGTGTCGAAG CCCCGGACGC TTATGCAGGC ATGCTGACGG ATTTCATAAA GGAGCTGGGC
CATGTCTGA
 
Protein sequence
MRVARLQNAM LHWREDGSPD GPAVVFANSL GTDLRLWDAV IARLPQNLRL IRYDKRGHGL 
SSCPEGPYSI DDLAEDALEL LDYAGVSSCV FVGLSIGGMI GQTLAARAPD RISALVLSNT
AAKMGERQMW LDRIQAIESG GIAALSDAVM ARWFAPAFLE TDAHILWRHM LERTPEAGYI
ASCHAIANAD LHALTQTLHQ PTLGIAGRYD GASPPALVEA TIDLIENARF NVIEDSGHLP
CVEAPDAYAG MLTDFIKELG HV