Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0558 |
Symbol | |
ID | 4077909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 595135 |
End bp | 595857 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005855 |
Product | protocatechuate 3,4-dioxygenase, beta subunit |
Protein accession | YP_612553 |
Protein GI | 99080399 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0665673 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.206378 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACG GATATGTAAA TCGCGACCGA CGCTGGCATC CCCCCAGCAT CACGCCCGAT TATAAAACCT CCGTCGCGCG CGGGCCGCGC CATGCGCCCT TGTCCTTTCC CACCACTTTG GTCGAGGAAA CCGGGCCTGT CTTTGGCCAC GAGATCCTGG GCCCGCGCGA CAACGACCTG ATCCTCAATT TTGCCAAGGA CGGCGGCATG GCGATCGGCC CGCGTATCAT TGTGCACGGG CAGCTGCGCG ATGAATTTGG CCGTGGCGTT CCCGGCGCGC TGATCGAGGT CTGGCAGGCC AATGCAGGCG GTCGCTACCG CCACAAGAAG GAAAGCTATC TTGCGCCGCT CGATCCCAAT TTTGGTGGCT GCGGGCGCTG CATCACGGAC GCAGAGGGGT TTTACGAGTT CCGCACCATC ATGCCAGGCC CCTACCCCTG GCCCAATACC ATGAACGACT GGCGCCCCGC GCATATCCAT TTCTCGATCT TTGGCGCGAG CTTTGCCCAG CGCCTCATCA CCCAGATGTA TTTCGAGGGA GATCCGCTCA TTTGGCGCTG CCCAATCGTG GATACGATCC CCACGCGCGA AGCGATTGAA AGCCTCGTGG CGCCCCTTGA TATGGCGCGC ACCGTGCCGA TGGACGCGCG TGCCTATAAA TTCGACATCA CCCTGCGCGG CCGCCGCCAG ACCCTGTTTG AAAATCGCAT GGAGGGGCTT TGA
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Protein sequence | MSNGYVNRDR RWHPPSITPD YKTSVARGPR HAPLSFPTTL VEETGPVFGH EILGPRDNDL ILNFAKDGGM AIGPRIIVHG QLRDEFGRGV PGALIEVWQA NAGGRYRHKK ESYLAPLDPN FGGCGRCITD AEGFYEFRTI MPGPYPWPNT MNDWRPAHIH FSIFGASFAQ RLITQMYFEG DPLIWRCPIV DTIPTREAIE SLVAPLDMAR TVPMDARAYK FDITLRGRRQ TLFENRMEGL
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