Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0509 |
Symbol | |
ID | 4078255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 535543 |
End bp | 536205 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638005805 |
Product | GntR family transcriptional regulator |
Protein accession | YP_612504 |
Protein GI | 99080350 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.137799 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAAGC TGCTGACGGG CAACCGGCCC ACTGCCGAAA ATACGGGGTC CGCGCATGAT CGCGTCTACC GCGCCTTGCG GACCCGGATC ATGCATGGGG CGATTGCGCC CGGAGCATCG CTGACCCTGC GTGGAATCGG CAAGGAATAT GATGTCTCGA TGACCCCGGC GCGCGAGGCG GTGCGCCGGC TGGTGGCCGA GGGCGCGTTG TTTCTCTCTT CTTCCGGTCG GGTCTCCACG CCAGAGCTCT CCAATGAGCG GATCGAGGAG CTGGCAGCCC TTCGGGCGCT GATCGAGGTG GAACTTGCCT CGCGGGCGCT GCCACGGGCG CATATGGCGC TGATCGACCG GCTGCAGGCG ATCAATGGGA CCGTCGCAGA GATGATCTCT AAACGTGATG CGGTGGGCTA TATTCGCACC AATCTCGAAT TTCATCGCAC GCTCTATCTG CGTGCGCAGG CGCCAGCGAT GCTGGCCATG GCCGAAACAG TCTGGCTGCA ACTGGGGCCG ACCATGCGGG CGCTTTATGG TCGTCTGGGC CGGACCGAAC CGCCGCAGAA CCACAAGCTG ATCATTGCCG CGCTCAAGGC GGGTGACGAG CCGGGGCTAC GGCTCGCGTT GCGCACGGAT GTGACACAAG GGCTACGGCT TCTGGCGGGC TAG
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Protein sequence | MDKLLTGNRP TAENTGSAHD RVYRALRTRI MHGAIAPGAS LTLRGIGKEY DVSMTPAREA VRRLVAEGAL FLSSSGRVST PELSNERIEE LAALRALIEV ELASRALPRA HMALIDRLQA INGTVAEMIS KRDAVGYIRT NLEFHRTLYL RAQAPAMLAM AETVWLQLGP TMRALYGRLG RTEPPQNHKL IIAALKAGDE PGLRLALRTD VTQGLRLLAG
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