Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0477 |
Symbol | |
ID | 4078515 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 497149 |
End bp | 499365 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638005773 |
Product | isocitrate dehydrogenase, NADP-dependent |
Protein accession | YP_612472 |
Protein GI | 99080318 |
COG category | [C] Energy production and conversion |
COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGAAA ATTCAACGCC GGACATTTTG TATACCATTG TAGACGAAGC GCCCGAGCTG GCCTCGGCAT CTTTCCTGCC GATCATCCGC AAATTTGCGG ATGCTGCCGG TGTCAGCGTT GGCACAAAGG ACATTTCGCT GGCCGCACGC ATTATCGCGA CCTTCCCGGA GAACCTCACC GAAGAGCAGC GCCAAAGCGA TGACCTCGCC GCGCTGGGCG AGCTGGTGAA GACCCCCGAC GCAAATGTCA TCAAACTGCC CAACATCTCT GCATCCGTGC CCCAGCTGGT GGCCGCGATC GAGGAACTGC AGGCGCAGGG GTACAAGCTG CCCGACTACC CCTACGAGCC CGCAACCGAC GCGGAAAAGG AAATCCGCGC CCGCTACGAC ACCATCAAGG GCTCCGCGGT GAACCCAGTC CTGCGCGAAG GCAACTCGGA CCGTCGTTCG GCCAAAGCCG TGAAGAACTA CGCTCAGAAC AACCCGCATT CGATGGGCGC ATGGTCTGGC GACAGCAAGA CCAAAGTCTC GTCGATGCCC GGCAACGACT TTTATGCCAA CGAGAAATCC GCCACCATTT CCGCCGAGCA GGCCGGTGAC GCGAAGATCG AATTTGTCGC AAAAGACGGG TCCGTCACCG TTCTGAAAGA CGGCTGGCCG CTGGCAGAAG GCACGGTTGC CGATGCGACC TTCATGTCCG CCAAAGCGCT CGCCGCGTTC CTGTCTGGCG CGATCGAGGA TACCAAGGCG GACGGCACCA TGTTCTCGCT GCACATGAAG GCCACCATGA TGAAGGTCTC CGACCCGATC ATCTTTGGCC ACGCGGTCAA AGCCTGGCTC GGCCCTGTGT GGGATAAACA CGGCGCCGCA ATTGCTGCCG CAGGTGGGTC GCCGAACTCC GGTCTGGGTG CGGTTCTGGC CGCCATCGAC AGCCTGCCCA ACGCAGATGA GATCAAATCC GAGATCGCCG CGCTCGAACG CCCCTCCATG TATATGGTGG ACAGCGACAA GGGTATCACC AACCTGCATG TGCCCTCCGA CGTGATCATC GATGCCTCCA TGCCGGCCGT GATCCGTGCT GGCGGTAAGG GCTGGGACGA GACCGGCGCC AAGGGCGACA CCAACTGCGT GATCCCCGAC CGCTGCTACT CCACCGTCTA TGACGAGACC ATCAACTTCT TCAAAGCCAA TGGCGCGCTC GACGTGACCA CTGCCGGTTC GGTCGCAAAC GTCGGCTTGA TGGCGCAAAA GGCGGAAGAG TATGGCTCGC ACCCGACGAC CTTCGAAGCC CCGGCAGACG GCGAGATCCG CGTTATTCTG GCCAATGGCG AGACCCTGCA CAGCCACGAA GTCGAGGCCG GCGACATCTG GCGCGCCTGC ACCGTGAAAA AGGCTCCAAT CGAGAACTGG ATTCAACTGG CTTTGGACCG TCAGCGCCTG ACCGGGTCCG AGGCGATCTT CTGGCTGGAC GCAAACCGCG CCCATGACGC AGAGCTGATC AAATACGTCA AACCCGCGCT TGATGCGGCT GGCGTCGCCG ACAAGTTCCT GATCATGGCG CCGCGCGAAG CCACCCGTCA GAGCCTCGAG ACCATCACTG CGGGCAAGGA CAGCATCGCC ATCACCGGCA ACGTGCTGCG CGACTACCTG ACCGACCTGT TCCCGATCCT CGAGCTTGGC ACCTCGGCCA AGATGCTGTC GATTGTGAAG CTGATGAACG GCGGCGGCTT GTTTGAGACC GGCGCAGGCG GTTCCGCGCC CAAACACGTG CAGCAACTGG TTGAGGAAAA CCACCTGCGT TGGGACTCCA TGGGTGAGTT CTGCGCTCTG GGCGAAAGCC TGAAGTTCCT CGCCGATGTC AAAGGCAACG AGAAGGCAGG CGTGCTTGGC GCAGCTGCCG AGGTTGCGAC CCAAGGCATC CTCGACAACA ACAAATCGCC CGAGCGCAAA GTCGGCCAGC CCGACAACCG CGACAGCCAC TACTGGTTTG CCCGCTACTG GGCAGAAGCC CTCGCGGCAC AGGGTGATGA CGCGGAGCTG GCCGCGCATT TCAAACCGAT TGCCGAGGCT CTTGCCTCCA ACGAAGCGGC GATTCTGTCT GAACTCGCCG CCGCTCAGGG AGGCGCAGCC GACATCGGTG GCTATTACCA CCCCTCCGTT GAAAAGAAGG CCGCCGTCAT GCGCCCCTCT GCAACCCTCA ACGGCATCAT CGGCTGA
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Protein sequence | MAENSTPDIL YTIVDEAPEL ASASFLPIIR KFADAAGVSV GTKDISLAAR IIATFPENLT EEQRQSDDLA ALGELVKTPD ANVIKLPNIS ASVPQLVAAI EELQAQGYKL PDYPYEPATD AEKEIRARYD TIKGSAVNPV LREGNSDRRS AKAVKNYAQN NPHSMGAWSG DSKTKVSSMP GNDFYANEKS ATISAEQAGD AKIEFVAKDG SVTVLKDGWP LAEGTVADAT FMSAKALAAF LSGAIEDTKA DGTMFSLHMK ATMMKVSDPI IFGHAVKAWL GPVWDKHGAA IAAAGGSPNS GLGAVLAAID SLPNADEIKS EIAALERPSM YMVDSDKGIT NLHVPSDVII DASMPAVIRA GGKGWDETGA KGDTNCVIPD RCYSTVYDET INFFKANGAL DVTTAGSVAN VGLMAQKAEE YGSHPTTFEA PADGEIRVIL ANGETLHSHE VEAGDIWRAC TVKKAPIENW IQLALDRQRL TGSEAIFWLD ANRAHDAELI KYVKPALDAA GVADKFLIMA PREATRQSLE TITAGKDSIA ITGNVLRDYL TDLFPILELG TSAKMLSIVK LMNGGGLFET GAGGSAPKHV QQLVEENHLR WDSMGEFCAL GESLKFLADV KGNEKAGVLG AAAEVATQGI LDNNKSPERK VGQPDNRDSH YWFARYWAEA LAAQGDDAEL AAHFKPIAEA LASNEAAILS ELAAAQGGAA DIGGYYHPSV EKKAAVMRPS ATLNGIIG
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