Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0418 |
Symbol | |
ID | 4076178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 428354 |
End bp | 430087 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638005713 |
Product | alpha amylase, catalytic region |
Protein accession | YP_612413 |
Protein GI | 99080259 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.537622 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.197095 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACAT CCTTTGCTGC ACGCCTGTCG CAACTGCTGA CCCAAATCTA TCCGGATTTG GACACGGAGA TCCTTGGCTC CAAAGTGGTT GAGGCGTTTT GGCCCGAAGG CAGTCACCGG CGCAAGCGCC CGCGCAGGCC TGGAAATTCT CTTTGGTCAG AACGCGACGC ATTGCTGATC ACCTATGGCA ACACCATGCG TGATGGGGCG CATAAGCCGT TAGACCTGCT GCATGATTTC CTGCTGACTT ATATGAAGGG TGTTGTGAAT GGCGTGCATA TCCTGCCGTT TTTTCCCTTC ACTTCGGACG ACGGGTTTGC CGTCACGGAC TATCGCAAGG TGAATCCTGA GCTGGGTGAT TGGGCCGACA TTCGCCGGAT CGGCGGCGCG TTTCACCTGA TGTCTGACAT GGTGCTCAAC CATGTGTCCT CGCAGAGCGC CTGGTTCAAC GCCTACCGGC AGGGGCAGCC GCCTTATGAC CGCTTCTTCT ACGAGGCTTC GCCCTCGGAC GATCTGAGCG CAGTGGTGCG TCCACGCACA ACGCCGCTGC TGCAGGAGGT AGAGACAGCC ACGGGCGCGA AACATGTGTG GTGCACCTTC AGCCACGATC AGGTTGATCT CAATTTTGAG AACCCGGAGG TCCTGCTGGA AATCCTTCGG ATCATTCGCC TGCATATCGA TCAGGGGGTC CGCATTATCC GGCTCGATGC GGTGGCCTTT ATATGGAAAG AGGTTGGGAC CAGTTCGATC CACCTGCCGC AAACCCATGC GATTGTACAG CTGCTGCGCC TGCTGGCAGA TTATGCGACC GAGACGGTGG TACTGCTGAC CGAGACCAAC GTGCCGCGGG CTGAGAATCT CAGCTACTTT GGCAATCGCA ACGAGGCCCA TGTGGTCTAT AATTTTCCGC TGCCGCCATT GATCCTGCAC GCGATGATGG CGGGCTCGGC GCGCTACCTG CTGAATTGGG CACGGGCGAT GCCGCCGGCG CCCCTGGGAT GCGCCTATTT GAATTTCACC GCGAGCCACG ATGGAATCGG GATGCGCCCG GCGGAGGGGG TGTTGCCGCA GGAGGAAATC GACCAGATGA TCGCCTGCGT GCGGGCGGTA GGGGGTCTTG TGTCCATGCG GGCCTTGCCG GGGGGTGGTG AAGCGCCCTA CGAGGTGAAC TGCACCTATT TTGACGCGCT TGGCCGAACC TTTGACAGGG GCGAAGCGCG AAAGGTGGAT CGATTCATCT GTGCGCAGAC CATTCCCATG AGCCTTGAGG GAATTCCGGC GTTTTACATT CACGCGATGC TGGCGACGGC CAATGATCAT GATGCGGTGG CGCGGCGCGG TATGAACCGG GCGATCAACC GCCACCGGTG GGATTACGGC GAGCTGAAGG CGCGTCTGAA TGACGCGGAC AGCGCGCAGG CTCAGGTGAT GTCGGCGCTC TCCGAACGGC TGCGGGTCCG GGCCGAGCAG CCGGCGTTTC ACCCCAATGC TACCCAGTTC ACTTTGCAGC TGGATGATCG TGTCTTTGCG CTCTGGCGGC AGTCGCTGGA CCGGGCGCAG TCGATCTTTG CGCTGCACAA TGTCAGCGGA GATGGGGTGA TCCTGCATCC CGGCGCGCTG AACCTTATTG AAGGTGAGAC ATGGCGGGAT CTGTTGTCCG GTGACATGTT TGAAAGCGAT GCAGAGATCA CACTGGCACC CTATCAATGC CGTTGGATCA CCAATCAGGC TTGA
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Protein sequence | MATSFAARLS QLLTQIYPDL DTEILGSKVV EAFWPEGSHR RKRPRRPGNS LWSERDALLI TYGNTMRDGA HKPLDLLHDF LLTYMKGVVN GVHILPFFPF TSDDGFAVTD YRKVNPELGD WADIRRIGGA FHLMSDMVLN HVSSQSAWFN AYRQGQPPYD RFFYEASPSD DLSAVVRPRT TPLLQEVETA TGAKHVWCTF SHDQVDLNFE NPEVLLEILR IIRLHIDQGV RIIRLDAVAF IWKEVGTSSI HLPQTHAIVQ LLRLLADYAT ETVVLLTETN VPRAENLSYF GNRNEAHVVY NFPLPPLILH AMMAGSARYL LNWARAMPPA PLGCAYLNFT ASHDGIGMRP AEGVLPQEEI DQMIACVRAV GGLVSMRALP GGGEAPYEVN CTYFDALGRT FDRGEARKVD RFICAQTIPM SLEGIPAFYI HAMLATANDH DAVARRGMNR AINRHRWDYG ELKARLNDAD SAQAQVMSAL SERLRVRAEQ PAFHPNATQF TLQLDDRVFA LWRQSLDRAQ SIFALHNVSG DGVILHPGAL NLIEGETWRD LLSGDMFESD AEITLAPYQC RWITNQA
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