| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0415 |
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| Symbol | |
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| ID | 4076175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 425629 |
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| End bp | 426225 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005710 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_612410 |
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| Protein GI | 99080256 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.261796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCGAGG GCACAAGCGG TTGCCGGGAG AGCGACAGAG TGACAGGTGA GGCATATTCC
GAGACGACAG TCTGGATGCT GGCAGTGCGC GATGACAGGG ACAAAGCCGC CTTCGGGCGC
TTGTTCGATC ACTTTGCGCC CCGCCTCAAA GGCGTGATTT GCCGCTCGGG TGTCTCCCCT
GCGCAGGCTG AGGACATCGT TCAGGACGTG ATGCTCACGG TCTGGCGAAA GTCGCATATG
TTCGACCCCG GTCGCGCTCA GGTTTCGGCC TGGATCTACC AGATCGCGCG CAACCGGCAG
ATCGACATCT TGCGCAAGGA AAAGCGTCCC GTACCGGAAG AGTTGAAGCC GGTCGAGGAC
ACAGAGGATG ACGCGTCACA GGTCGTGGCG CTGGAACAGG AGACGCAGGC TCTGCGTGCG
GCGCTTCAGA CCCTGAAGCC CGCGCAGCGC GAAATGGTGG AGCGCGCCTA TCTGGGCGAG
CTGACCCATG CGGAGATCAA GGCCGAGACC GGTCTGCCGC TGGGAACCAT CAAGTCGCGC
ATCCGGCTGG GGCTGGAGAA ACTGCGTCAT GAATTGAAGG GAACGCAACG CTCATGA
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| Protein sequence | MGEGTSGCRE SDRVTGEAYS ETTVWMLAVR DDRDKAAFGR LFDHFAPRLK GVICRSGVSP
AQAEDIVQDV MLTVWRKSHM FDPGRAQVSA WIYQIARNRQ IDILRKEKRP VPEELKPVED
TEDDASQVVA LEQETQALRA ALQTLKPAQR EMVERAYLGE LTHAEIKAET GLPLGTIKSR
IRLGLEKLRH ELKGTQRS
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