Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0413 |
Symbol | |
ID | 4076173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 423335 |
End bp | 424114 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638005708 |
Product | hypothetical protein |
Protein accession | YP_612408 |
Protein GI | 99080254 |
COG category | [S] Function unknown |
COG ID | [COG3496] Uncharacterized conserved protein |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00475452 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.256697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAA GCGCGCCCAT ATCCCCCCTG GTAAAAGGGC CGCTGCATCT GGCAGGCACC ACCACCCACG CCAGACGCGG CGCCATCCAG AACGCGTTTC GATATGGCGT GGACTATGTT CTGATTGATC CGCAATCGAC CCGCGGCCCG TTGCTCTTTT CGCGCAACCG CTGGAACCTT GCCTCTGTCA TGGATCGAAA CCACGGTGGC GCCCCCAAAA AAGGACGCGG TCTGGATTGG GCGAAAGAGG TGTTCGAACA CGCGGGCCTT GCCCCTCAAA ACCTCCGGAT CCTGTTGCTC ACTCAGCCGA GCTTTCTGGG TTACATCTTC AACCCGGTGA GCTTCTGGCT CGCATACGAC GGAGCGACCC TCAGGGGCGT GATCGCCGAG GTGTCAAACA CCTTTGGCGA CCGTCACAGC TATCTTTGTG CTGAGCCTGA ATTTGCACCG ATTACCGCAA AATCCTGCCT GAGTGCGCAG AAAATCTTTC ACGTCTCCCC CTTTCAGGAG GTCGCGGGCG ACTATCGATT TACCTTTGAT ATAACAGGGA CTCGGATCGC GATCCGCATC GCCCACAAAA ACGGCTCCGA AGGCGTCATC GCAACCCTGA TGGGCGAATT GCACGACTTG AATAACGCCC GCCTGATCAA AGCCAGCCTG CGTCGCCCGT TTGGGGCCAT GCGCACGGTC GCCTTGATCT ACTGGCAGGC GCTGAAACTC AAACTCAAGG GCGCCCGGTA TCGAAGACGC CCGCTCCCGC CCGAACAGGA GGTCAGCTGA
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Protein sequence | MSASAPISPL VKGPLHLAGT TTHARRGAIQ NAFRYGVDYV LIDPQSTRGP LLFSRNRWNL ASVMDRNHGG APKKGRGLDW AKEVFEHAGL APQNLRILLL TQPSFLGYIF NPVSFWLAYD GATLRGVIAE VSNTFGDRHS YLCAEPEFAP ITAKSCLSAQ KIFHVSPFQE VAGDYRFTFD ITGTRIAIRI AHKNGSEGVI ATLMGELHDL NNARLIKASL RRPFGAMRTV ALIYWQALKL KLKGARYRRR PLPPEQEVS
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