Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0389 |
Symbol | |
ID | 4078622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 396997 |
End bp | 398121 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005684 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_612384 |
Protein GI | 99080230 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCGC TTCATGGCCT CAAGGTTGTT GAACTCGCCC GCATTCTGGC TGGTCCCTGG ATTGGTCAGG CGCTCGCGGA TCTGGGCGCC GAAGTGGTCA AGGTCGAAAG CCCCGAGGGT GATGACACCC GCCGCTGGGG GCCGCCCTTT GTGGAGCGGG AGGGTGACAA AACGGCCGCC TACTATTATG CCGCCAACCG GGGCAAGACC TGTGTCACGG CTGATTTTCG CACATCAGAG GGGCAGGCCC AGGTGCGCGA TCTGGTCCGC GATGCCGACA TTCTGATCGA GAATTTCAAA GTGGGCGGGC TGAAGAAATA TGGCCTGGAT TTCGAGAGCC TCTCCGCTCT CAATCCGCGT CTGATCTATT GCTCTGTCAC CGGATTTGGT CAGGATGGTC CCTATGCGAC GCGCGCGGGG TATGACTTCT TGCTGCAGGG CATGTCGGGG CTGATGTCGA TCACCGGGGC CGCCGATGGG GAGCCGCAAA AGGTTGGCGT GGCGATCACG GATGTGGTGA CGGGGCTTTA TGGCAGCATC GGTATTCTGG CAGCGGTGGA GCAGCGGCAC CGCACCGGGC GGGGGCAGCA TATCGATATG TCCTTGCTCG ATTGCGCCAC AGCGATGTTG GCCAATCAGA ACATGAACTA TCTGGTAACC GGGGAAAGCC CCACCCGAAT GGGCAATGAA CATCCCAATA TCGCACCCTA TCAGGTGATG GCGGTGCGCG ATGGTCATGT CATTCTTGCG GTTGGCAATG ATGGTCAGTT CACCCGACTG TGCGATGTGC TTAACCTTGC AGGGCTCAAG GATGATCCGC GCTTTTCCAC CAACCAGCTG CGGGTGGCGC ACCGTGCAGA TTTGACGCCG CTGCTGGCGG CGGCGCTTGC ACAGTGGAGC CAGTCGGATT TGCTGGCTGC GCTTGAGGCC GCGACCGTTC CGGCTGGGCC GATCAACACC ATCGGGCAGG CTTTTGAGGA TGCGCAGATC AAACATCGTC AGATGCAGAT TGCGCCCGAG GGCGTGCCAG GCGTGCGGGG GCCTTGGGTA TTTTCTGACG CGGACCTGGC GCTTGACCGC TCGGCCCCCG TCCTGCCGCG CGACACGAAG CCCGAGAAAG ATTAA
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Protein sequence | MTPLHGLKVV ELARILAGPW IGQALADLGA EVVKVESPEG DDTRRWGPPF VEREGDKTAA YYYAANRGKT CVTADFRTSE GQAQVRDLVR DADILIENFK VGGLKKYGLD FESLSALNPR LIYCSVTGFG QDGPYATRAG YDFLLQGMSG LMSITGAADG EPQKVGVAIT DVVTGLYGSI GILAAVEQRH RTGRGQHIDM SLLDCATAML ANQNMNYLVT GESPTRMGNE HPNIAPYQVM AVRDGHVILA VGNDGQFTRL CDVLNLAGLK DDPRFSTNQL RVAHRADLTP LLAAALAQWS QSDLLAALEA ATVPAGPINT IGQAFEDAQI KHRQMQIAPE GVPGVRGPWV FSDADLALDR SAPVLPRDTK PEKD
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