Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0266 |
Symbol | rplE |
ID | 4077674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 276995 |
End bp | 277558 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638005560 |
Product | 50S ribosomal protein L5 |
Protein accession | YP_612261 |
Protein GI | 99080107 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0094] Ribosomal protein L5 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0642331 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.446671 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTGACG ATGCAACCTA CACCCCGCGT CTGAAGACCC TCTACAAGGA CACCATCCGT GGCGCCCTCA AAGAGGAATT CGGCTACAAG AACGAGATGC AGATCCCCAA GCTGGACAAG ATCGTTCTGA ACATCGGCTG CGGCCGTGCA GCCGTCAAAG ACAGCAAGAA GGCGAAATCG GCTCAGGAAG ACCTGACCAA GATCGCCGGT CAGAAAGCGC TGACCACCGT TGCAAAGAAC TCCATCGCTG GCTTCCGCGT TCGTGAAGGC ATGCCGATGG GTGCAAAGGT GACCCTGCGT GGCGAGCGGA TGTATGAATT CCTCGACCGT CTGATCACCA TCGCGATGCC CCGGATCCGC GACTTCCGCG GTGTGTCCGG CACCTCTTTC GACGGTCGTG GCAACTACGC CCTTGGCCTC AAAGAGCACA TCGTGTTCCC GGAAATCGAT TTCGACAAGA TCGACGAAGC CTGGGGCATG GACATCGTAA TTGCCACCAC CGCGAACACC GACGCGGAAG CTAAGGCGCT GTTGAAAGCT TTCAACATGC CCTTCAACAG CTGA
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Protein sequence | MLDDATYTPR LKTLYKDTIR GALKEEFGYK NEMQIPKLDK IVLNIGCGRA AVKDSKKAKS AQEDLTKIAG QKALTTVAKN SIAGFRVREG MPMGAKVTLR GERMYEFLDR LITIAMPRIR DFRGVSGTSF DGRGNYALGL KEHIVFPEID FDKIDEAWGM DIVIATTANT DAEAKALLKA FNMPFNS
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