Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0234 |
Symbol | rpoB |
ID | 4076267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 247712 |
End bp | 251851 |
Gene Length | 4140 bp |
Protein Length | 1379 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638005528 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_612229 |
Protein GI | 99080075 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAAA CGTTCCTTGG CCAGAAACGT CTTCGCAAAT ATTACGGCAA AATCCGCGAA GTGCTGGATA TGCCGAACCT CATTGAGGTT CAGAAATCTT CTTATGATCT TTTCCTGCGC TCCGGTGATG CGCCTCAGCC GCTTGACGGC GAAGGCATCA AAGGTGTGTT CCAGTCGGTT TTCCCGATCA AGGATTTCAA CGAAACCTCC GTTCTGGAGT TCGTGAACTA CGCGCTTGAG CGTCCCAAGT ACGACGTTGA CGAATGCATG CAGCGTGACA TGACCTACAG CGCACCGCTG AAGGTCACTC TGCGCCTGAT CGTGTTTGAT GTCGATGAGG ACACCGGCGC GAAATCCGTT AAAGACATCA AGGAACAGGA TGTCTTTATG GGCGACATGC CCCTGATGAC CCCGAACGGG ACGTTCATCG TGAACGGCAC CGAACGTGTG ATCGTGTCCC AGATGCACCG CTCACCGGGT GTGTTCTTTG ACCACGATAA GGGCAAAACC CATTCCTCCG GTAAACTGCT GTTTGCCTGC CGCATCATCC CGTATCGCGG CTCCTGGCTC GACTTCGAAT TCGACGCCAA AGACATCGTC TTTGCTCGCA TCGACCGTCG CCGCAAACTG CCGGTGACCA CGCTGCTTTA TGCGCTGGGT CTCGACCAGG AAGGCATCAT GGATGCCTAC TACAACACCG TGAACTTCAA ACTTGAGAAG TCGCGCGGCT GGGTCACGCC CTTCTTCCCC GAGCGTGTGC GTGGCACCCG CCCGACCTAT GACCTCGTGG ATGCCGCCAC TGGCGAAATC ATCTGCGAAG CAGGCAAGAA AGTCACCCCG CGCGCGGTCA AGAAGATGAT CGACGAAGGC AACATTACCG AGCTGCTCGT TCCGTTCGAG CATATTGTCG GTAAATATGT CGCCAAGGAT ATCATCAACG AAGAAAACGG CGCGATCTAT GTCGAAGCGG GCGACGAGCT GACGCTTGAG TATGACAAAG ACGGCGACAT CATTGGCGGG TCCGTCAAAG AGCTGCTCGA TGCCGGTATC ACCGACATCC CGGTTCTCGA CATCGACAAC GTCAATGTCG GCCCCTACAT GCGCAACACC ATGGCGCAGG ACAAGAACAT GTCCCGCGAA ACCGCGCTCA TGGACATCTA CCGCGTGATG CGTCCGGGCG AGCCGCCCAC CGTCGAAGCG GCCTCCGCGC TGTTTGACAC CCTGTTTTTT GATTCCGAGC GCTACGACCT GTCGGCCGTT GGTCGCGTGA AGATGAACAT GCGTCTGGCT CTGGATGCCG AAGACACTCA GCGGACCCTG CGCAAAGAAG ACATCGTCGC CTGTATCAAG GCGCTGGTGG AGCTGCGTGA CGGCAAGGGC GACGTGGACG ACATCGACCA CCTCGGCAAC CGCCGCGTGC GTTCCGTGGG CGAGCTCATG GAAAACCAGT ACCGCGTTGG TCTCCTGCGC ATGGAGCGCG CGATCAAAGA GCGTATGTCC TCTGTCGAGA TCGACACCGT GATGCCGCAG GACCTGATCA ACGCCAAGCC CGCTGCTGCG GCTGTGCGTG AATTCTTTGG CTCCTCGCAG CTGTCGCAGT TCATGGACCA AACGAACCCG CTGTCGGAAG TCACCCACAA ACGCCGTCTC TCGGCGCTTG GCCCCGGTGG TCTGACCCGC GAGCGTGCCG GCTTTGAGGT GCGCGACGTT CACCCGACCC ACTATGGCCG GATGTGTCCG ATTGAAACGC CGGAAGGTCC GAACATTGGT CTGATCAACT CGCTGGCGAC CTTTGCCCGC GTGAACAAGT ATGGCTTCAT CGAGACCCCC TATCGCGTGG TGAAGGACGG ACAAGTGACC GATGAAGTTC ACTACATGTC CGCCACCGAG GAAATGCGTC ACACCGTGGC GCAGGCGAAC GCCAACCTCG ATGAAGACAA CCGCTTTGTG AATGACCTTG TGTCCACCCG TCAGTCGGGC GACTACACGC TGGCTCCGAA TGAAAGCGTC GACCTGATCG ACGTGTCGCC AAAACAGTTG GTATCGGTTG CGGCCTCGCT CATTCCGTTC CTTGAGAACG ACGACGCGAA CCGCGCCCTG ATGGGTTCGA ACATGCAACG TCAGGCGGTT CCGCTGCTGC GCGCAGAAGC GCCGCTGGTC GGTACCGGCA TCGAGGAAAT CGTGGCGCGC GACTCTGGCG CGGCGATCAT GGCGAAGCGC GCAGGCGTGA TCGACCAGAT CGACGCTCAG CGTATCGTGA TCCGTGCAAC CTCCGATCTG GAGCTGGGCG ACGCAGGCGT GGACATCTAC CGCATGCGCA AGTTCCAGCG CTCGAACCAG AACACCTGCA TCAACCAGCG CCCGCTGGTG AAAGTGGGTC AGACGGTCGA GAAGGGCGAA GTGATCGCAG ATGGTCCCTC CACCGATATG GGTGAACTGG CGCTCGGTAA AAACGTGGTT GTCGCGTTTA TGCCGTGGAA CGGTTACAAC TATGAGGACT CCATCCTGAT CTCCGAGCGT ATCGCGCGTG ACGACGTCTT CACCTCGATC CACATCGAGG AATTCGAAGT CGCCGCTCGT GACACCAAGC TTGGGCCGGA AGAGATCACC CGCGATATTC CGAACGTTGG TGAAGAAGCG CTGCGCAACC TCGACGAGGC AGGCATCGTC TACATCGGTG CCGATGTGGA GCCGGGCGAT ATCCTCGTGG GTAAGATCAC ACCGAAGGGC GAAAGCCCGA TGACGCCGGA AGAAAAGCTT CTGCGCGCCA TCTTTGGTGA GAAAGCCTCC GACGTGCGTG ACACCTCGCT GCGTGTGAAG CCGGGCGACT ACGGTACTGT TGTTGAGGTT CGCGTCTTCA ACCGTCACGG CGTCGAAAAA GACGAACGTG CCCTGCAGAT CGAGCGCGAA GAAGTCGAAC GTCTGGCCCG TGACCGGGAC GACGAGCTCG GCATTCTGGA CCGCAACATC TACGCCCGTC TGCGTGACCT TCTGCTCGGC AAAACTGCCG TCAAAGGCCC CAAAGGCGTG CGCGGCAACA CCGTCATCGA CGAGGATCTG CTGGACAACC AGCTAACCCG TGGTCAGTGG TGGATGCTTG CTCTGGAAGA AGAGCAGGAC GCTCAGATCC TTGAGGCTCT GAACGAGCAG TACGAAGCAC AAAAGCGTGC TCTGGACGCC CGTTTCGAGG ACAAGGTCGA GAAGGTCCGC CGCGGCGACG ATCTGCCTCC GGGTGTGATG AAGATGGTCA AAGTCTTCAT CGCCGTGAAG CGTAAGCTGC AGCCGGGCGA CAAGATGGCC GGTCGTCACG GGAACAAAGG TGTTATCTCT CGCGTGGTGC CGATGGAGGA CATGCCGTTC CTCGCCGATG GTACCCCGGT GGACTTCTGC CTTAACCCGC TCGGCGTGCC GTCGCGTATG AACGTTGGTC AGATCCTTGA AACCCACATG GGTTGGGCCG CACGCGGCCT GGGTCTGAAA ATCGACGACG CACTTCAGGA CTATCGCCGC ACTGGCGATC TGACCCCTGT GCGTGATGCG ATGCGCGAGG CCTATGGTGA GGACGTTTAT GAAGAGGGGA TCTCTTCCAT GGACGAAACC CAACTCATCG AGGCTGCTGG TAACGTGACC CGTGGTGTGC CGATCGCAAC GCCGGTCTTT GACGGTGCGA AAGAAGATGA CGTCAACGAC GCGCTGGTGC GCGCGGGCTT TGACCAGTCC GGTCAGTCGA TCCTGTTCGA TGGCCGCACC GGTGAGCAGT TCGCACGTCC AGTGACCGTG GGCATCAAGT ATCTCTTGAA GCTGCACCAC CTCGTGGACG ACAAGATCCA CGCCCGTTCC ACTGGTCCGT ACTCGCTGGT TACCCAGCAG CCGCTCGGTG GTAAGGCACA GTTCGGTGGT CAGCGCTTTG GTGAGATGGA GGTCTGGGCT CTGGAAGCTT ACGGCGCCGC CTACACCCTG CAAGAGATGC TCACCGTGAA ATCGGATGAC GTCGCTGGCC GGACCAAGGT CTATGAGTCG ATCGTCAAGG GCGAGGACAA CTTTGAGGCG GGCGTACCGG AATCGTTCAA CGTTCTGGTC AAAGAAGTCC GCGGCCTCGG CCTGAACATG GAACTCCTGG ATGCGGAGGT TGAGGAGTGA
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Protein sequence | MAQTFLGQKR LRKYYGKIRE VLDMPNLIEV QKSSYDLFLR SGDAPQPLDG EGIKGVFQSV FPIKDFNETS VLEFVNYALE RPKYDVDECM QRDMTYSAPL KVTLRLIVFD VDEDTGAKSV KDIKEQDVFM GDMPLMTPNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAC RIIPYRGSWL DFEFDAKDIV FARIDRRRKL PVTTLLYALG LDQEGIMDAY YNTVNFKLEK SRGWVTPFFP ERVRGTRPTY DLVDAATGEI ICEAGKKVTP RAVKKMIDEG NITELLVPFE HIVGKYVAKD IINEENGAIY VEAGDELTLE YDKDGDIIGG SVKELLDAGI TDIPVLDIDN VNVGPYMRNT MAQDKNMSRE TALMDIYRVM RPGEPPTVEA ASALFDTLFF DSERYDLSAV GRVKMNMRLA LDAEDTQRTL RKEDIVACIK ALVELRDGKG DVDDIDHLGN RRVRSVGELM ENQYRVGLLR MERAIKERMS SVEIDTVMPQ DLINAKPAAA AVREFFGSSQ LSQFMDQTNP LSEVTHKRRL SALGPGGLTR ERAGFEVRDV HPTHYGRMCP IETPEGPNIG LINSLATFAR VNKYGFIETP YRVVKDGQVT DEVHYMSATE EMRHTVAQAN ANLDEDNRFV NDLVSTRQSG DYTLAPNESV DLIDVSPKQL VSVAASLIPF LENDDANRAL MGSNMQRQAV PLLRAEAPLV GTGIEEIVAR DSGAAIMAKR AGVIDQIDAQ RIVIRATSDL ELGDAGVDIY RMRKFQRSNQ NTCINQRPLV KVGQTVEKGE VIADGPSTDM GELALGKNVV VAFMPWNGYN YEDSILISER IARDDVFTSI HIEEFEVAAR DTKLGPEEIT RDIPNVGEEA LRNLDEAGIV YIGADVEPGD ILVGKITPKG ESPMTPEEKL LRAIFGEKAS DVRDTSLRVK PGDYGTVVEV RVFNRHGVEK DERALQIERE EVERLARDRD DELGILDRNI YARLRDLLLG KTAVKGPKGV RGNTVIDEDL LDNQLTRGQW WMLALEEEQD AQILEALNEQ YEAQKRALDA RFEDKVEKVR RGDDLPPGVM KMVKVFIAVK RKLQPGDKMA GRHGNKGVIS RVVPMEDMPF LADGTPVDFC LNPLGVPSRM NVGQILETHM GWAARGLGLK IDDALQDYRR TGDLTPVRDA MREAYGEDVY EEGISSMDET QLIEAAGNVT RGVPIATPVF DGAKEDDVND ALVRAGFDQS GQSILFDGRT GEQFARPVTV GIKYLLKLHH LVDDKIHARS TGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VAGRTKVYES IVKGEDNFEA GVPESFNVLV KEVRGLGLNM ELLDAEVEE
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