| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0227 |
|---|
| Symbol | |
|---|
| ID | 4076260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 241908 |
|---|
| End bp | 242441 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638005521 |
|---|
| Product | transcription antitermination protein nusG |
|---|
| Protein accession | YP_612222 |
|---|
| Protein GI | 99080068 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0250] Transcription antiterminator |
|---|
| TIGRFAM ID | [TIGR00922] transcription termination/antitermination factor NusG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.355469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAC GGTGGTATTC GGTCAGCGTT CTTTCGAACT TCGAAAAGAA AATCGCAGAA
CAGATTCGCA CCGCGGTCGT GGAGCAGGGT CTAGAGGACG AGATCGACGA GGTTCTGGTT
CCCACCGAGG AAGTGATCGA AATTCGCCGG GGCAAGAAAG TCTCGACCGA GCGCCGCTTC
ATGCCGGGCT ATGTTCTGGT TCACATGGAA ATGTCCGACC AGGGCTATCA CCTGATTTCT
TCCATCAATC GCGTCACCGG TTTCCTCGGT CCGCAAGGCC GCCCGATGCC GATGCGTGAT
GCCGAAGTGC AGGGCATCCT GGGCCGCGTC GAAGAAGGTG TCGAGGCGCC GCGTACACTC
ATTTCCTTTG AGGTGGGCGA AAAGGTCAAA GTCAACGACG GCCCCTTCGA GGATTTCGAC
GGTATGGTCG AGGGCGTGGA CGACGAGAAC CAGAAGCTCA AGGTCACGGT GTCCATCTTT
GGTCGCGAGA CCCCGGTGGA GCTCGACTTC ACGCAGGTCA CCAAACAGGT TTGA
|
|---|
| Protein sequence | MAKRWYSVSV LSNFEKKIAE QIRTAVVEQG LEDEIDEVLV PTEEVIEIRR GKKVSTERRF
MPGYVLVHME MSDQGYHLIS SINRVTGFLG PQGRPMPMRD AEVQGILGRV EEGVEAPRTL
ISFEVGEKVK VNDGPFEDFD GMVEGVDDEN QKLKVTVSIF GRETPVELDF TQVTKQV
|
|---|
| |