| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0090 |
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| Symbol | |
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| ID | 4078756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 92456 |
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| End bp | 94201 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005377 |
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| Product | heparinase II/III-like |
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| Protein accession | YP_612085 |
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| Protein GI | 99079931 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.379483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAAT ATGACCGAAT GGCCAGTCGC GGCACGCGAC TGCTGAACCG CTATACCGCC
TGGAAGGCGC GCAAACAGCC CGCGGCCACT GGGTTTGTCT CGCAGCCCGA GCCGCGTACC
ATAGGCAGTT TTGCGCGTGG GCGGCAGCTG GTGGCCGGCA ACCTCCTGTT TGCAGGCTAT
CTGGTAGAGA GTGACACCAC TGGCCTTTGG GATGTGGAGG CGCCTGATTT TGCCTTTGAG
GCAGAGCGCC AGGGCTGTAC ATGGCTCGAT GATCTGGCCG CGGTCGGCGA TCTGAAGGCG
CGCAGCAAGG CCCAGCACTG GGTCCGGGGC TGGATCGATG AGTTTGGCAA GGGCACTGGT
CCCGGCTGGT CGCCGGATCT GACCGGGCGG CGCGTGATTC GATGGATCAA CCACGCCCTA
TTCCTGCTGA GTGGTCAGGA CAAACCAGCC TCCGATGCCT TTTATCGGTC TCTCTCGCAG
CAGACGTGGT TCCTGTCGCA GCGCTGGAAG GGGGCATCGC CTGGCTTGCC GCGGTTTGAG
GCGCTTACCG GGCTGATCTA TGCGGGGCTT GCGCTCAAGG GCTGCGAGGA ACTCGCAGAC
CCTGCGGTCA AAGCGCTGGC TCAGGACTGC GCGCAGCAGA TCAACGCCGA GGGCGGCCTG
CCGACCCGCA ACCCCGAAGA GCTACTGGAT GTGTTCACCT TGCTCACATG GGCCGCAGCG
GCGTTGCATG AAGCGGGACG GTCGGTGCCG CGCGAGCATC ACGCCGCGCT GGATCGTATC
GCACCCACAC TGCGGGCCTT GCGCCACAGC GACGGGGCGC TGGCGCGGTT TCATGGCGGC
GGGCGCGGGC AGGAGGGCTG GCTCGATCAC GCGCTGGCCG CCTCGCATGT CCCTGCAAGA
CCCTTTGAAG GGCTGGCGAT GGGGTTTGCA CGACTCTCGG CGCGGCGCAC TTCGCTCATC
ATTGATGCCA CCGTGCCACC CGTTGGCAAG GCCTCCTACA ATGCACACGC TTCGACTTTG
GCTTTCGAGC TAACGTCCGG GCGGCGTCCC TTGATCGTGA ATTGCGGCGC GGGCGAGAAT
TTCGGGCTAG AGTGGCGTCG GGCGGGACGG GCCACGCCCT CTCATTCTGC GCTCTGTATC
GAAGGGCACT CAAGCGCCCG GCTGGCCGCG CCGCAAAAGG GCACGGGACA TGAGTTCCTG
ATCGACGCGC CCACCGATGT GCCAATCGAG CGCGAAGACC TTGTGGATGG GTATCGGTTT
CAGGGTGCTC ATGATGGCTA TGCCAAATCC TATGGCGTGA CCATTGCGCG CTCTTTGGAA
CTGTCGGTGG ACGGGCGCAT GGTGTCGGGC GAGGACATGG TGCTGGCACT TGATGACGCC
GCAAAAAAGT GCTTCGACAG GGCGCTGGAC GCGGGCGGCC TGCGCGGTAT TGGCTATGAT
TTACGGTTCC ATTTGCACCC GGATGTGGAC GCAGCCCTTG ACTTAGGGGG CGCAGCAGTA
TCCATGGCGC TCAAGAGTGG GGAAATCTGG GTATTCCGTC ACGATGGTCA ATGCGACCTC
AAGCTGGAAA CCAGCGTTTA CCTGGAAAAG GCCCGCTTGA AGCCGCGTCA ATCGCTGCAA
ATCGTCCTGT CGGGCCGGGC CATTCAATAT GCGACCCAGA TCCGCTGGAC CCTCAGCAAG
GCGCAGGAAA CGGCTGTGGC CGTGCGCGAC TTGGCCCGCG ACGACCCCAT GGCCTACGAA
GAGTGA
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| Protein sequence | MSKYDRMASR GTRLLNRYTA WKARKQPAAT GFVSQPEPRT IGSFARGRQL VAGNLLFAGY
LVESDTTGLW DVEAPDFAFE AERQGCTWLD DLAAVGDLKA RSKAQHWVRG WIDEFGKGTG
PGWSPDLTGR RVIRWINHAL FLLSGQDKPA SDAFYRSLSQ QTWFLSQRWK GASPGLPRFE
ALTGLIYAGL ALKGCEELAD PAVKALAQDC AQQINAEGGL PTRNPEELLD VFTLLTWAAA
ALHEAGRSVP REHHAALDRI APTLRALRHS DGALARFHGG GRGQEGWLDH ALAASHVPAR
PFEGLAMGFA RLSARRTSLI IDATVPPVGK ASYNAHASTL AFELTSGRRP LIVNCGAGEN
FGLEWRRAGR ATPSHSALCI EGHSSARLAA PQKGTGHEFL IDAPTDVPIE REDLVDGYRF
QGAHDGYAKS YGVTIARSLE LSVDGRMVSG EDMVLALDDA AKKCFDRALD AGGLRGIGYD
LRFHLHPDVD AALDLGGAAV SMALKSGEIW VFRHDGQCDL KLETSVYLEK ARLKPRQSLQ
IVLSGRAIQY ATQIRWTLSK AQETAVAVRD LARDDPMAYE E
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