Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0073 |
Symbol | |
ID | 4075970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 75566 |
End bp | 76279 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005360 |
Product | AraC family transcriptional regulator |
Protein accession | YP_612068 |
Protein GI | 99079914 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTCC GCGCCGCATT GGGGCTCAGG GTGGCCAGCG ATGCACCGCC GGATGACATT CGCCGGGCGA TTGCGCGCTC GGACACTGCT GTTGTGCGCA GCCTTTGCCT GGTCCCGGAT CCCGGTGTGA TCTGCGGCAA GTTTTTGCGC TTGCAACGCT ATTGCGCGCT CGAAATTCGG ATGGCTGTTC AGGATGTCGG CGACCGGAGC CTACGACTCG CAATCGATCC AGCGGCATCT CAAGACCGCG TGGAAGAACA GCTCATTATC CTGCACGCAC TGATGGAGCG CGCAGGGCTT CAGGTGCGAA CCTCACGGCA GGGTGTCATT CACTGGCAGG ATGCTCCGCC GCTACCCGAG GTTGACACCG GAACCTCGCA GCGACTGACC GATCATCTGC ATCACCTGAT CGCAAGCGAT CCGGCACGGG CGTGGCGTAT CGAGGAAACG GCAGCATGGC TTGGCCTCTC GACACGGAGC CTGCAACGCT ACTTGCTGGC CGAAGGGGGG CGCTTCTCCG CAACCCTGCG CCATATGCGC ACCAGCCTCG CCTCCGACAT GTTACGCAAC AGCGACCAGA GCCTGGGCGA GATCGGGTTT TGTTGTGGCT ACGCGGATCA GGCGCATTTT CAGCGGGAAT TTCGCAAAGT CAGCGGTCAG ACCCCAAGGC GATTTCGCAG CCAACCAAGG GAGAGCGTCA AAACGGCGCT TTGA
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Protein sequence | MDFRAALGLR VASDAPPDDI RRAIARSDTA VVRSLCLVPD PGVICGKFLR LQRYCALEIR MAVQDVGDRS LRLAIDPAAS QDRVEEQLII LHALMERAGL QVRTSRQGVI HWQDAPPLPE VDTGTSQRLT DHLHHLIASD PARAWRIEET AAWLGLSTRS LQRYLLAEGG RFSATLRHMR TSLASDMLRN SDQSLGEIGF CCGYADQAHF QREFRKVSGQ TPRRFRSQPR ESVKTAL
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