Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0022 |
Symbol | |
ID | 4078685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 23940 |
End bp | 24503 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 638005309 |
Product | SSU ribosomal protein S30P / sigma 54 modulation protein |
Protein accession | YP_612017 |
Protein GI | 99079863 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00266512 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.613644 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTACA AAGTCAGCGG AAAACAGATC GACATCGGCG AATCTCTGCA AACCCACGTA GAGACTGAGT TGAGTGCGGT TCTGGAGAAA TACGCAGGCC GACCGACCGA TGCTCAGGTC GTTTTCTCCC GCAACGCGCA TGAATTTGTC TGCGAAGCAA TCGTGCACCT GTCTACCGGC CTGACATGTC AGGCCAAAGC CCATGCCACT GAGATCTATG CGTCTTTTGA AAGCTGCCTT GAAAAAATGG ACAAGCAGCT GCGCCGTTAC AAGCGGCGTC TTAAGGACCA CCACCGTGAT CGCGCCGAGC CGGTTGAACT TATGGGGGCG AGCTCGTATA TCCTCGCGTC TGAAGAAGCG GAATCCGACC AGGAACCGGA CTCGCTGCAG CCCATTATCG TGGCGGAGAT GGAAACCAAG ATCCCGTCTC TGTCGGTCGG TGAGGCCGTG ATGCAGATGG AGCTTGCGGG CTCCCCGGTT CTCGTGTTCC GCAACGAAGG TAAAGACGGA CTGAACGTGG TGTATCGGCG TGAAGATGGC AACATCGGCT GGATCGATCC CTGA
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Protein sequence | MRYKVSGKQI DIGESLQTHV ETELSAVLEK YAGRPTDAQV VFSRNAHEFV CEAIVHLSTG LTCQAKAHAT EIYASFESCL EKMDKQLRRY KRRLKDHHRD RAEPVELMGA SSYILASEEA ESDQEPDSLQ PIIVAEMETK IPSLSVGEAV MQMELAGSPV LVFRNEGKDG LNVVYRREDG NIGWIDP
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