Gene TM1040_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0022 
Symbol 
ID4078685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp23940 
End bp24503 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content56% 
IMG OID638005309 
ProductSSU ribosomal protein S30P / sigma 54 modulation protein 
Protein accessionYP_612017 
Protein GI99079863 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1544] Ribosome-associated protein Y (PSrp-1) 
TIGRFAM ID[TIGR00741] ribosomal subunit interface protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00266512 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.613644 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTACA AAGTCAGCGG AAAACAGATC GACATCGGCG AATCTCTGCA AACCCACGTA 
GAGACTGAGT TGAGTGCGGT TCTGGAGAAA TACGCAGGCC GACCGACCGA TGCTCAGGTC
GTTTTCTCCC GCAACGCGCA TGAATTTGTC TGCGAAGCAA TCGTGCACCT GTCTACCGGC
CTGACATGTC AGGCCAAAGC CCATGCCACT GAGATCTATG CGTCTTTTGA AAGCTGCCTT
GAAAAAATGG ACAAGCAGCT GCGCCGTTAC AAGCGGCGTC TTAAGGACCA CCACCGTGAT
CGCGCCGAGC CGGTTGAACT TATGGGGGCG AGCTCGTATA TCCTCGCGTC TGAAGAAGCG
GAATCCGACC AGGAACCGGA CTCGCTGCAG CCCATTATCG TGGCGGAGAT GGAAACCAAG
ATCCCGTCTC TGTCGGTCGG TGAGGCCGTG ATGCAGATGG AGCTTGCGGG CTCCCCGGTT
CTCGTGTTCC GCAACGAAGG TAAAGACGGA CTGAACGTGG TGTATCGGCG TGAAGATGGC
AACATCGGCT GGATCGATCC CTGA
 
Protein sequence
MRYKVSGKQI DIGESLQTHV ETELSAVLEK YAGRPTDAQV VFSRNAHEFV CEAIVHLSTG 
LTCQAKAHAT EIYASFESCL EKMDKQLRRY KRRLKDHHRD RAEPVELMGA SSYILASEEA
ESDQEPDSLQ PIIVAEMETK IPSLSVGEAV MQMELAGSPV LVFRNEGKDG LNVVYRREDG
NIGWIDP