| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1571 |
|---|
| Symbol | |
|---|
| ID | 8807340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 1666137 |
|---|
| End bp | 1667252 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | YP_003460804 |
|---|
| Protein GI | 289208738 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.647884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGA AAGACTCATC CCCCACAAGC GAAACCCGCA CCAGTGGTGA CCGACCCGAT
CCCGGCAACC ATTCGCGATA CGACGACGAG ATCAGCCTTG TTGATCTGTG GAACGTGCTG
TCCAGGCGCA AGTGGTGGAT TGCCGCTGTG ACCATTGCAG TCCTGCTCCT CGGCACGTTA
TACGGCTTCC TTAAGACCCC CTCGTACAGC TTTCAGACAA CCATCCAGCT GGGCCAAGAC
GACCGGGGAA ATCCGGTTGA GGACCCAAAC GTGACGGTTA CGTTCCTCAA TAACGTCCTA
ATACCAGGCA TTTGGCGTGA TCTCCTCGCG GACAGCCCGG AGACCAGACC ACCAGAGGCC
AGTGCACGGT ACGTGGATGG AACCGAGTAC GTCCACCTGA CGACATCAGC GCCAATGGAC
CGCAAAGAGG CGGTTGAACA ACTCCACACG CTCACTACAC GCGCGCTTCG TCAGAATCAC
GTTCAACACA TTGACGATAT TCGCGCGGAA CTCGCCGATC AACGTCGTGA GCAAGAGCTA
CAGCACGCAG CCCAACTCGA GCAGCTGCAA GGCGACCTAG ACTCGATCAC CGAACATAAG
GAACGTGCCA CATCGCGACT GGAATTGCTG ACAGAAGAAC GCGCCCTATT GGAAGAACAG
ATCGATGGCC TTCACCCCCT TCGGGAGCAA CTGGACGCGG CCCTCGCGGA CACGGATCAG
AGCGCCGCAC CGTTGTGGAG CATGATGCCC CTAACCTCAA TCGTGGACAT GCGTTATAGC
GCAGAAAGGC GTTTGCGGAC CGAGCTTCCA GATCACGTAC AGGAAGTTGA GCAGCGCCTC
AGTGAACTGG AGTCCTCAAG CGAACGCATC GCATCACAGA TGGAGCGAGA ACAGAGCCGC
CACGAAATAG CGATGGCTGC CCTGGATCGC AGAGAACAAC GGGTTCGCGA AACGGTCGCC
CGCGGATCGG ATTATGCGTT GGCATCAAAC ACGCCAGAGG GTCCTGGACG ATCCCTGTTC
GTGGCTCTGT CTCTCATACT CGGCCTGATG CTGGGTGTCT TCGGGGCGTT TTTCCGTGAG
TTTCTGGCGA ACGTGCGGGC AACAGAAGCC AACTAG
|
|---|
| Protein sequence | MSTKDSSPTS ETRTSGDRPD PGNHSRYDDE ISLVDLWNVL SRRKWWIAAV TIAVLLLGTL
YGFLKTPSYS FQTTIQLGQD DRGNPVEDPN VTVTFLNNVL IPGIWRDLLA DSPETRPPEA
SARYVDGTEY VHLTTSAPMD RKEAVEQLHT LTTRALRQNH VQHIDDIRAE LADQRREQEL
QHAAQLEQLQ GDLDSITEHK ERATSRLELL TEERALLEEQ IDGLHPLREQ LDAALADTDQ
SAAPLWSMMP LTSIVDMRYS AERRLRTELP DHVQEVEQRL SELESSSERI ASQMEREQSR
HEIAMAALDR REQRVRETVA RGSDYALASN TPEGPGRSLF VALSLILGLM LGVFGAFFRE
FLANVRATEA N
|
|---|
| |