| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1542 |
|---|
| Symbol | |
|---|
| ID | 8807311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 1641346 |
|---|
| End bp | 1642329 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | transposase IS116/IS110/IS902 family protein |
|---|
| Protein accession | YP_003460779 |
|---|
| Protein GI | 289208713 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00714409 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.00689732 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCATA TTGGCATTGA TGTCAGCAAG AACAAGCTCG ACTGCATGTG GGTCCGGGAT
CTGGAGGCGG GCAAGGTCAA GCCCAAGGTA TTCCCGAACC GCCAGGACCA GTACCCGGAG
TTGCTGCGCT GGCTGCAGCG CAACACGGGT GAAGCGCCCG AGACGCTTCA GGTGTATCTG
GAGGCCACCG GCATCTACCA CGAACCGCTG GCCTACTGGC TGCATGAGCA GGGGGTTCGG
GTCCATGTGC TGAACCCGGC CCAGGTGCGC TTCCACGCCC AGGGCATGGG GGTGCGCAAC
AAGACGGATC GCAAGGACAG CATGATGCTG GCGCGTTACG GCATCGAACG CGCGCCCGCA
CCGTGGCAGC CGGAACCCCC GGAGGTGCGG GAACTCAAGC GTCTTCTGGG GCGGCTGGAG
GCGCTGGAGC AGGACATCCG GCGCGAGGAG AACCGGCTGG AGAAGGCGCA GTTCAGTGAG
GATGCGCTGG CCCAGGAGTC GATCGGCAAC GTGCTGGAGG CCCTGCGCGA GGAACACCGG
CGTCTCCAGC AGCAGATCGA CGACCACTTC GACGCGCATG ACCACCTGAA GCGGGATCGG
GCCCTGCTGG AGAGCATCCC CGGGATCGGC CGGGTGTTAT CGGCCTCGAT GACCGCGACG
TTGCGCAGCC GTGCGTTCAC CAGTGCTCGG CAGGCGGCGG CGTTCCATGG ACTGGTGCCG
GTCCAGCAGG AATCGGGCAT CTCGGTCCAG CGGCGACCGC AGCTGGCGAA GGCCGGCTCC
AGCCGCCTGC GACGCAAGCT CTACATGGCG GCGGTCACGG CCGCGCACCA CAATGCCGAC
GTTCGGGCGC AGTACCAGCG GCTGTTGCGG CGCGGCAAGG CGAAGATGGC GGCAATCGGC
GCCGCGATGC GCAAGCTGCT CCATATCGCC TTCGGTGTGC TGAAGTCTCA GCAGCCGTAT
CAGCCTCGCT GCAGCACCGG TTGA
|
|---|
| Protein sequence | MAHIGIDVSK NKLDCMWVRD LEAGKVKPKV FPNRQDQYPE LLRWLQRNTG EAPETLQVYL
EATGIYHEPL AYWLHEQGVR VHVLNPAQVR FHAQGMGVRN KTDRKDSMML ARYGIERAPA
PWQPEPPEVR ELKRLLGRLE ALEQDIRREE NRLEKAQFSE DALAQESIGN VLEALREEHR
RLQQQIDDHF DAHDHLKRDR ALLESIPGIG RVLSASMTAT LRSRAFTSAR QAAAFHGLVP
VQQESGISVQ RRPQLAKAGS SRLRRKLYMA AVTAAHHNAD VRAQYQRLLR RGKAKMAAIG
AAMRKLLHIA FGVLKSQQPY QPRCSTG
|
|---|
| |