Gene TK90_1175 details

Gene Information

• Locus tag: TK90_1175
• ID: 8806937
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. K90mix
• Kingdom: Bacteria
• Replicon accession: NC_013889
• Strand: +
• Start bp: 1250616
• End bp: 1251377
• Gene Length: 762 bp
• Protein Length: 253 aa
• Translation table: 11
• GC content: 66%
• Product: RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
• Protein accession: YP_003460420
• Protein GI: 289208354

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.216131
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 0.392171
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATGTCGC CGCGTAATCG CCTCCCCGGA TACGAGAGCG TGGCCGCGAC AGGCCACGAG 
CAGCGCGTTG CGGAGCATAT CGAGCTGGTG CATCGCATCG CGCATCATCT GATGGCGCGT 
CTGCCTTCCT CGGTCCAGGT CGATGACCTG ATCCAGGCCG GCATGATCGG CCTGCTGGAG 
GCCGCGCGGC AATTCGAAGG CGGGCAGGGT GCCACGTTTG CGACCTATGC CGGGATTCGG 
ATCCGTGGCG CGATGATCGA CGAATTACGC CGCAGTGACT GGACGCCGAG ATCGGTACAC 
CGCAACAGCC GCAAGATCGC CGAGGCGATC CAGACGGTCG AAGCCAGAGA GGGGCGCGCG 
GCGCGCGGGG TCGAAGTGGC CGAGGAACTC GAGGTGCCGA TCGACGAGTA CTACTCGATG 
CTGCAGGACC ATGCCGGCGC CCATCTGTTC GCGCTGGACG ACCTGGGCGG CACCGATGGT 
GATGCGGACC GGGTGATCGA GGGGCAGGAG GCCTCGCCCT CGCGCACAAT CGAGGCTGGA 
GAATTTCGCG AGGAGCTGGC CGCCGCGCTG GGCGATTTGC CCGAACGCGA ACGTCTGGTG 
CTGTCGCTTT ATTACATCGA GGAGCTCAAC CTGCGCGAGA TTGGCGCGGT GCTGGGGGTG 
ACCGAGTCGC GCGTCAGCCA GATCCGCAGT CAGGCCGTCA TCCGACTGCG CGCGCGCCTG 
GGTTCCTGGC TCGAAGACGG CGAGGCTTTG CAGTTATTCT GA 

 

Protein sequence

MMSPRNRLPG YESVAATGHE QRVAEHIELV HRIAHHLMAR LPSSVQVDDL IQAGMIGLLE 
AARQFEGGQG ATFATYAGIR IRGAMIDELR RSDWTPRSVH RNSRKIAEAI QTVEAREGRA 
ARGVEVAEEL EVPIDEYYSM LQDHAGAHLF ALDDLGGTDG DADRVIEGQE ASPSRTIEAG 
EFREELAAAL GDLPERERLV LSLYYIEELN LREIGAVLGV TESRVSQIRS QAVIRLRARL 
GSWLEDGEAL QLF