| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0533 |
|---|
| Symbol | |
|---|
| ID | 8806273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 562387 |
|---|
| End bp | 564180 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_003459784 |
|---|
| Protein GI | 289207718 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.985347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACAC CCGATGACAG CCCCCGCGAT GCCCACATCC TGATCGTGGA CGACAACCGA
ATGAACGTGG ATCTGCTCGG GGCCATCCTC GAGGAGGCCG GGTTCCGGGA TGTCGCCGCC
GAAACCAGCG GGGAACGCGC GGTGGAGCGC TGGCGCGAAG AATCCTTCGA CCTGCTGCTG
CTGGACATCC GCATGCCCGG CATCGACGGC CACGAGGTAA TGCGCCAACT CAACAGCGAC
CTGGCCGAAG GCGACTGGCT CCCAGTCATC ATACTGACCG CACAAATCGA CCCCCAGACC
CGGGAACAGG CCCTGGCCGC CGGAGCGCTA GACTTCATTA CCAAGCCGTT CAACGCCACC
GAAGTGGTGC AGCGGATCGA CAATCTGCTG CGGGTCCGGG CCCTGCACAA CGCCGCTCAC
GGCCGCGCCG AAGACCTGTC GCGCAGCCTG GCCGACCGTG CACGCACCTT GCAACGTACC
GAGCAAGACC TCGAACACCT GGCCCACCAC GACCCGGCCA CCGGCCTGCC GAACCGGCAT
TCACTGCTGC GTTTCATCGA CGAGGCCATC GAGACCGGCA GCGCCCTGGA CCTGGTCATG
GTGCACGTCC GTGGCCATGA GGCAGTGGAA CGCCTTGAGG GCTATGCCGC GGCCGACCTG
ATGCTGCGCG AGATCGGTCA ACGGCTGCGC CTGGCCCTGG AAGACCAGAC CCCGGGGCGA
GTGCAGTGTG GCATCTGGGG CGGTTCCACA TTGCTACTCG CCGTGGCCAG CCGCGAAAGC
ATCGCCACCA GCACCCTGCA GGACTGCATG GATGCCTCGC TGGCGCACCT GCGCCTGGGG
CGCTACGAGA TCGCCCCCAG CGCCTCTGCC GGACACGTCC GGGCCCCCGA CCATGGCCGC
AACGCCGAGG AACTGATCCG CCGGGTTTCA CTGACTCTGG CCAAGGGCGA ACGCCGCGGG
AGCGAGTGGC TCAGCTTCGA CCCCGTACTG GAGCAGGACG CACGCCGTCG CCATCAACTG
GAATACGGTC TGACGGTCGC CCGCGAGCAA GATCAGCTCC ACCTGCTCTA TCAGCCCAAG
ATCGAGCTCG CCAGCGGCTG CCTGGTCGGC TTCGAGGCCC TGATGCGCTG GGAGCATCCG
CGTCTTGGGC TTATCTCGCC GGGGGAATTC ATCCCGCTGG CGGAAAACAC TGGGCGTATC
GCCGAACTGG GAGAATGGGC CCTGCACGAG GCGCTGGCCG CCGCCCGCCG CTGGCGCGAG
GCCAGTGGCC ACTGCCCACC GATCGCGGTC AATGTATCGA CCCAGCAATT CGCCGCCCTG
ACCCGGTCCG GCAGATCGCT GGTGGATGCC GTGCAAAGCG CGCTGAAGGC CAGCGGCCTG
AACGGCAACG CACTGGAGAT CGAGATTACC GAGACCGCAG TGATGCACGA CGTGGCCGCG
ACAGTGGAGG AACTTCGAGC CCTCAGGGCC CTCGGGGTAT CGATCGCGAT CGATGACTTC
GGTACCGGCT ATTCATCGCT CGCGTACCTG CGTCGCCTGC CGGCCACGAC CATCAAGATC
GACCGCAGCC TGATTGACGG CGTATCCGCA AACCCGAGCA TGGACACCCT GGCCCGCGCC
ATCCTGTCGG TCAGCCGCGG TTTTGGCCTG ACCACTGTCG CCGAGGGCAT AGAGACCGAG
GCCGACGCAC GGCACCTGGC AGCCCTCGGG TGCCCGATTG GCCAGGGCTA CCTCTACCAC
CGCCCGCTCC CCGAGACGGA CGCAAGCGGT CTGCTGGCCC GCGTCTGCGC CTGA
|
|---|
| Protein sequence | MITPDDSPRD AHILIVDDNR MNVDLLGAIL EEAGFRDVAA ETSGERAVER WREESFDLLL
LDIRMPGIDG HEVMRQLNSD LAEGDWLPVI ILTAQIDPQT REQALAAGAL DFITKPFNAT
EVVQRIDNLL RVRALHNAAH GRAEDLSRSL ADRARTLQRT EQDLEHLAHH DPATGLPNRH
SLLRFIDEAI ETGSALDLVM VHVRGHEAVE RLEGYAAADL MLREIGQRLR LALEDQTPGR
VQCGIWGGST LLLAVASRES IATSTLQDCM DASLAHLRLG RYEIAPSASA GHVRAPDHGR
NAEELIRRVS LTLAKGERRG SEWLSFDPVL EQDARRRHQL EYGLTVAREQ DQLHLLYQPK
IELASGCLVG FEALMRWEHP RLGLISPGEF IPLAENTGRI AELGEWALHE ALAAARRWRE
ASGHCPPIAV NVSTQQFAAL TRSGRSLVDA VQSALKASGL NGNALEIEIT ETAVMHDVAA
TVEELRALRA LGVSIAIDDF GTGYSSLAYL RRLPATTIKI DRSLIDGVSA NPSMDTLARA
ILSVSRGFGL TTVAEGIETE ADARHLAALG CPIGQGYLYH RPLPETDASG LLARVCA
|
|---|
| |