Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TK90_0263 |
Symbol | |
ID | 8805994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. K90mix |
Kingdom | Bacteria |
Replicon accession | NC_013889 |
Strand | - |
Start bp | 270287 |
End bp | 272176 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | RNA polymerase, sigma 70 subunit, RpoD |
Protein accession | YP_003459514 |
Protein GI | 289207448 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.262087 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGTG AAGAGCAACA ATCCCAGCTC AAGGAACTGA TTGCCAAGGG CAAGGAGCAG GGATACCTCA CGTATACCGA GGTCAACGAC CACCTGCCCG ACTCGATCAT CGACTCCGAC CAGGTCGAGG ACATCATTGC GATGATCAAC GACATGGGCA TCGCGGTGCA CGAGCAGGCC CCGGACGCCG ACAGCCTGCT GTTGTCCGAT GGCTCCGTCT CCGCCGACGA GGACGCCGAA GACGCCGTGG CCGCGCTCGC CTCGGCCGAT TCCGATTTCG GTCGCACCAC CGACCCCGTG CGCATGTACA TGCGCGAGAT GGGCACGGTC GAACTGCTGA CCCGCGAAGG CGAGATCCGC ATCGCCAAGC GTATCGAAGA GGGCCTGATG CAGGTCCTGT TCGCGCTCGC CCATCACCCG GGCGCGATCG AACACCTGAT CCGCGAGTAC GACCAGATCG TCGAGAACAA CGGCCGTCTG ACCGATCTCG TGGTCTCCTT CATCGACCCG AAGAACCCGC TGGATGGCGA AGCCGTCGCG CGCGGGCTGG TCTCCCCGGA AGACGCCCAG AAGGCCGAGG AAGCCCAGAA GGCCGCGGCC GCCGAGGCCT CGCCGGAGCT GGACGCGATC GTGGAAGAGG TCGAAGACGC CGAGGAAGAA GACGCCGAAC CGGTGGACAC CGGCCCCGAC CCGGAAGAGG CGCGCGAGCG CTTCAACAAG CTGCGCAAGC TGCACGCCAA GGCGCACAAG GCCTTCGAAA AGGGCGACCG CAAGGCCTAC GCCACCGCGC GCGAGGCCAC CGCCAAGTAC TTCATGGAGT TCAAGCTGGT GCCGCGCATG GTGGACCAGC TGACCACCAA GCTGCACGGC ACCATCGACC GCATCCGCAG CCATGAGCGC CGCATCATGG AACTGGCCGT GAACCAGGCG CAGATGCCGC GCAAGTCGTT CATCGACAGC TTCCCGAAGA ACGAGACCAA CCTCGACTGG ATCAAGCAGG CCTGCAAGGC CAAGGGCAAG TACACCACTG CCCTGGCCGA GCACGAGGAC GAGATCGTGC GCCTGCAGAA GAAACTCGCC GAGATCGAAC ACGAGGCCAG CCTGAACATC TCCGAGATCA AGGAGATCAA CCGCCGCATG TCCATCGGCG AGGCCAAGGC CCGCCGCGCG AAGAAGGAGA TGGTCGAGGC CAACCTGCGC CTGGTGATCT CCATCGCCAA GAAGTACACC AACCGCGGCC TGCAGTTCCT CGACCTGATC CAGGAAGGCA ACATCGGCCT GATGAAGGCC GTGGACAAGT TCGAATACCG TCGCGGCTAC AAGTTCTCGA CCTACGCCAC CTGGTGGATT CGCCAGGCCA TCACCCGCTC CATCGCGGAC CAGGCCCGGA CCATCCGCAT CCCGGTGCAC ATGATCGAGA CGATCAACAA GCTCAACCGC GTCTCCCGCC AGATGCTGCA GGAGATGGGC CGCGAGGCCA CGCCGGAAGA GCTGGCCGAA CGCATGGAGA TGCCCGAGGA CAAGATCCGC AAGGTGCTCA AGATCTCCAA GGAACCGATC TCCATGGAGA CCCCGATCGG CGACGACGAA GACTCCCACC TGGGCGACTT CATCGAAGAC GAGAAGGTCG CCTCGCCATC CGACTCCGCC GCGCGCGAGA GCCTGTCCGA GGCCACCCGC GAGATCCTGT CCACGCTGAC CCCGCGCGAG GCCAAGGTCC TGCGCATGCG CTTCGGCATC GACATGAACA CCGACCACAC CCTCGAGGAA GTCGGCAAGC AGTTCGACGT CACCCGCGAG CGCATCCGCC AGATCGAGGC CAAGGCCCTG CGCAAGCTGC GTCACCCGAC CCGCGCCGAA CTGCTGCGCA CCTACACCGA CGCCGAATAA
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Protein sequence | MNREEQQSQL KELIAKGKEQ GYLTYTEVND HLPDSIIDSD QVEDIIAMIN DMGIAVHEQA PDADSLLLSD GSVSADEDAE DAVAALASAD SDFGRTTDPV RMYMREMGTV ELLTREGEIR IAKRIEEGLM QVLFALAHHP GAIEHLIREY DQIVENNGRL TDLVVSFIDP KNPLDGEAVA RGLVSPEDAQ KAEEAQKAAA AEASPELDAI VEEVEDAEEE DAEPVDTGPD PEEARERFNK LRKLHAKAHK AFEKGDRKAY ATAREATAKY FMEFKLVPRM VDQLTTKLHG TIDRIRSHER RIMELAVNQA QMPRKSFIDS FPKNETNLDW IKQACKAKGK YTTALAEHED EIVRLQKKLA EIEHEASLNI SEIKEINRRM SIGEAKARRA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR VSRQMLQEMG REATPEELAE RMEMPEDKIR KVLKISKEPI SMETPIGDDE DSHLGDFIED EKVASPSDSA ARESLSEATR EILSTLTPRE AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPTRAE LLRTYTDAE
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