| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2678 |
|---|
| Symbol | |
|---|
| ID | 2739265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 2715875 |
|---|
| End bp | 2719480 |
|---|
| Gene Length | 3606 bp |
|---|
| Protein Length | 1201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637161575 |
|---|
| Product | alpha-amylase family protein |
|---|
| Protein accession | NP_973276 |
|---|
| Protein GI | 42528178 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00868845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGG ACTCTTTTTT TCAAGAAATG GAATTTCACA TTAACGGAGA TGTCCGCAAA
AAGTGTAATT TAAGGTCGGT TCTTTTTTCT TCATGCGGAA ATGTAATATT TGAAAATATT
TCCGAAGTTC ATAATTTTGT TTTTAATTTT AATTCCCTTG TAAAGGAAGG CCTTTTTGGA
GAAGGTCAAG CTCATTTAAA AGCAGGCGAA TTAAATGCGA TGGGAATTTT AGATGAAGTT
CTTCATTATG TTTTAAGGCT TTACCGTCAA AATATTGATG CCGATTTTTT TGTTAAAGGA
TATGAATTTA TCGAAGAAGA ATTTAAAAAT AAAAGTCTTC ATAGTCTTGA TTTTTTATTA
AAAGAGTTTT GTAAAGATTT CCCCCCAAAG GATGTTTACA CGGATAAGCT CTCCTTAGAT
GAGTGGTTTG AATCAAATGA TGGTTCATCA AATGTACCCA ATAAAGTGCT GGCCTTTGAA
GAGTTTATTT TACTCTGTCT TGCAAATAGA AATCCTGCAA ATGCACAGTT TGAAGTTTTA
TTTAATAATT CAAATTTAAA AACAATAGAT TCCTACGGCA TTTTTTGGGA TACGGTAAAA
AGATGGTCAA AAAAAAATAG GCCCATAGGA CGCCGATTAG GAAAAGAACA AAGCGGCCTT
GATATTCTTT CTTTTTTGGA AGAACCTATG AACCGCTGTC CCGACAGTAT TTTAGGCCAG
CTTAATTATG TAAAAGAAAA CTGGAGCCGG TTTACACAAA ATATTTTACT CAAGGTTTTG
GGTGCCGAGG ACTTAATAAG GGAAGAAGAC AAGGCCGGCT GGGCTCCGCC TCAAGGAGGA
AGCTTTGATG TTCCGGTCTA CACCTTTGAA AATCTGTTAA AAGAATACGA GGCTTTTACT
CCCGATAAAA ATTGGATGCC CAACTTGGTT TTAATAGCAA AAAGCACCTT GGTTTGGCTG
GATCAGTTAA GTAAAAAATA TTCCGCCCCG ATTACGCGTC TCGATCAAAT CCCCGATGAA
GAGCTTAAAT TTTTTGCAGA TTCGGGAATT ACCGGGCTTT GGTTAATCGG TGTTTGGCAG
CGTTCCGAGG CGAGCCGCCG TATAAAAGAA ATTTGCGGAA ATCCTGATGC GGCCGCAAGT
GCCTACAGTA TCTATGACTA TGACATTGCA GAAGAACTAG GCGGCTGGCC GGCTCTGACT
AATTTACGAG AAAGAGCTTG GAAATTCGGA ATCAGGATGG CCGCCGACAT GGTTCCCAAT
CATACGGGCC TTGATTCCAA ATGGATTATG GAAGAGCCGA ATCTATTTTT GCAGACAAGG
GATAAGCCCT TTCCTTCATA TAGTTATGAT GGTGAAAATC TTTCCCGGGA TGAAAGAACA
AGCGTTTATC TTGAAAACGG TTACTATTCA AAGACGGACT GTGCCGTAGT TTTTAAGCGT
GTCGATAACT ATTCCGGGGA TGTACGCTAT ATTTATCATG GAAATGACGG CACCGGCCTC
CCGTGGAACG ATACGGCCCA AATAGATTTT TTAAACAGTG AAGCCCGCGA AAAGGTTATT
CAAAAAATTC TCCATGTCGC AAGGAATTTT CCTATTATAC GCTTTGATGC CGCTATGGTT
CTCGCTAAAA AACATATTCG CCGCCTCTGG TATCCGGCTC CAGGTTCAGG CGGAGACATT
GCAAGCCGCT CCCGCTATGC CCTCTCTATT GAAGAATTTG AAAGGAGAAT CCCCAAAGAA
TTTTGGAGAG AGGTTGTAGA CCGCTGTGCA AAAGAAGCCC CCGACACCCT CTTACTTGCC
GAAGCTTTTT GGATGATGGA AGGCTATTTT GTCCGCACCC TCGGAATGCA CCGCGTATAT
AATTCCGCCT TTATGAATAT GCTCAAAAAA GAAGAAAACG CAAAATACAG GGAAACCATA
AAAAATACCC TCGAATTCGA TCCTGAGGTG TTAAGGCGTT ATGTCAATTT TATGAATAAC
CCCGATGAAG AAACTGCTAT AGCCCAATTC GGGGACGGAG ATAAATACTT CGGTGTTTGC
ACGATGATGT CGGCTATGCC GGGGCTTCCC ATGTTCGGAC ACGGTCAGCT AGAAGGCTTT
ACCGAAAAGT ACGGCATGGA ATATAGAAGA TCTTATAAGG ATGAGGCTGT AAACTCCGGC
CTGCTTGAAA GACATAAAAA GGGAATTTTT CCTCTTTTAA AAAAACGATA TATTTTTTCG
GGCGTTGAAA AATTTAGACT CTTTGATTTT TGGAATGAAG GAAGCGTAAA CGAAAATGTT
TTTGTTTGGT CGAATTTTTT TAACGGAGAG CGCTCATTGA TTTTTTATAA TAATGCCTAT
GAAAGAGCAT CGGGCTGGAT ACAACTTTCG GCGGCTTTTG CCGTAAAAAA TGCACAAAAT
GAAAAAGAAT TAAGGCAGGA AAATCTTATG GACTCTCTTA ATTTAAATTC GGGAGAGGAC
TATTTTACGG TGTTTTATGA GCAGCGTTCT TCCTTATTCT TTTTAAGAAA AAATTCCGAG
CTTGCCGAAA AAGGCTTTTT TGCAGCTTTG GACGGTTATC AATGCCAAGT ATTTTTAAAT
ATCAATGAGA TTAAGGATGA TGAGGGCTAT TATAGGGAGC TATATCAAAA AGCGGACGGA
CGGGGTTTTA AAGATATTGA ATTTGAAATA AATAAATGTA AGTATGGCGG TCTTTACAAT
ACTATTCAAG ATTTATGCGC TAAAGACTTA TTCCCTCAAA TTTCGGATTA TTGTGGTACC
TATAAAAAAG AAGCAATTGA AGATGTATCA GAAAAAATTG AAGATATATC AAAAAAACTT
TACCCGAGAT TATTGAATTT TTTTACTACC TTTGAAGAAG TGTTTTTTGA AACCTTTCAT
TACGATGAGG AAAAAGAAAG CTTAAAAACC ATTAAAGAAA AAAACAAGAT GCGTACTTTG
TGCTTTAAAA ATTCTATTGA TTGCTTTTTA TATCTTTGTT CAAATGAGCC TTCTTTGATC
GATGAAAATA TTAAGGATGA AAGTCTTAAG ACCCAAGAAC GGCTCTTTAT AAATGCTCTT
AAGACCTTGG TTTTTGACAC AAGAGAGAAT GTACTTTTGT ATATGGCCAG TCTTTTATTG
TCAGCCCTGT TTAAATTTTT CCCTAAAGAA AAGATTAAAC TGTGCCGTTT TGATCTTGCT
TTTGCCGAGC TGCTTTGTTC TTTCGGGCTT CCCGAAGTAA ATTCAAAAAG TACCTTATTT
TTGTTAAGCC GCTTATTTTG CTTACCTGAA ACTGAGAAAA ACTTTTTTGA AAATTCGGGT
TCAAGCAAGG ATTGCGTTAA GGATTTTATG GATTTTTGTG TACATGATGA AGTAATAAAA
AACTATTTAG GTTTAAACGA GTGGAATGGG GAAATTTGGT TTAATAAAGA ATCTACTGAA
AGGCTGATTT TGGTAAATAT TTTGTTTAAA CTTGTATGGG AAGAAAGGCC TGAAGATAGT
CTATTCAAAT GCAATATTTT ATCTTTAAAC TTTTATGCAG GTATCTATTC GGATATGACC
AAGATGTTTT CGGCTGCCGA ATATAAATTA AAAAATATTA TTGATTTTTC AAGCGAAAAG
GCCTAG
|
|---|
| Protein sequence | MSTDSFFQEM EFHINGDVRK KCNLRSVLFS SCGNVIFENI SEVHNFVFNF NSLVKEGLFG
EGQAHLKAGE LNAMGILDEV LHYVLRLYRQ NIDADFFVKG YEFIEEEFKN KSLHSLDFLL
KEFCKDFPPK DVYTDKLSLD EWFESNDGSS NVPNKVLAFE EFILLCLANR NPANAQFEVL
FNNSNLKTID SYGIFWDTVK RWSKKNRPIG RRLGKEQSGL DILSFLEEPM NRCPDSILGQ
LNYVKENWSR FTQNILLKVL GAEDLIREED KAGWAPPQGG SFDVPVYTFE NLLKEYEAFT
PDKNWMPNLV LIAKSTLVWL DQLSKKYSAP ITRLDQIPDE ELKFFADSGI TGLWLIGVWQ
RSEASRRIKE ICGNPDAAAS AYSIYDYDIA EELGGWPALT NLRERAWKFG IRMAADMVPN
HTGLDSKWIM EEPNLFLQTR DKPFPSYSYD GENLSRDERT SVYLENGYYS KTDCAVVFKR
VDNYSGDVRY IYHGNDGTGL PWNDTAQIDF LNSEAREKVI QKILHVARNF PIIRFDAAMV
LAKKHIRRLW YPAPGSGGDI ASRSRYALSI EEFERRIPKE FWREVVDRCA KEAPDTLLLA
EAFWMMEGYF VRTLGMHRVY NSAFMNMLKK EENAKYRETI KNTLEFDPEV LRRYVNFMNN
PDEETAIAQF GDGDKYFGVC TMMSAMPGLP MFGHGQLEGF TEKYGMEYRR SYKDEAVNSG
LLERHKKGIF PLLKKRYIFS GVEKFRLFDF WNEGSVNENV FVWSNFFNGE RSLIFYNNAY
ERASGWIQLS AAFAVKNAQN EKELRQENLM DSLNLNSGED YFTVFYEQRS SLFFLRKNSE
LAEKGFFAAL DGYQCQVFLN INEIKDDEGY YRELYQKADG RGFKDIEFEI NKCKYGGLYN
TIQDLCAKDL FPQISDYCGT YKKEAIEDVS EKIEDISKKL YPRLLNFFTT FEEVFFETFH
YDEEKESLKT IKEKNKMRTL CFKNSIDCFL YLCSNEPSLI DENIKDESLK TQERLFINAL
KTLVFDTREN VLLYMASLLL SALFKFFPKE KIKLCRFDLA FAELLCSFGL PEVNSKSTLF
LLSRLFCLPE TEKNFFENSG SSKDCVKDFM DFCVHDEVIK NYLGLNEWNG EIWFNKESTE
RLILVNILFK LVWEERPEDS LFKCNILSLN FYAGIYSDMT KMFSAAEYKL KNIIDFSSEK
A
|
|---|
| |