Gene TDE2489 details

Gene Information

• Locus tag: TDE2489
• Symbol: prfA
• ID: 2741462
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 2511481
• End bp: 2512566
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637161381
• Product: peptide chain release factor 1
• Protein accession: NP_973087
• Protein GI: 42527989
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAC GATTGGATAA TTTAAGAAAG AGGCTTGTCG AAGTCGAAAA AGAAGTTGAA 
AACCCTAACC TTATCAAAGA TGTTGCAAAA TATAAAGAAA CCATGAGGGA ACACTCCTAT 
CTTTCAAAAT TGATGGAAGA ATACGATAAC TATCTTTCTA TCGAAAAACA GATAGAAGAT 
TCCAAGCTTC TCATTCAAGA AGAAAGCGAT GCCGAACTTA AAGAGATGGC GAGGGAAGAG 
CTGCATTCTC TTGAAGCCGC CTTTGAAAAA AGCGAGGCAG ATCTCAAGAT GCTTTTAATT 
CCGCCCGATC CTCTGGAAGA AAAAAATATT ATTATGGAAA TACGCGGCGG TACAGGAGGC 
GATGAAGCCG CCCTCTTTGC GGCCGACCTT TTTAGAATGT ATACCCACTA CGCCGAAATG 
AAAAACTGGA AGTACGAGGT TTTGTCCCTA AACGAAACCG AGCTCGGCGG TTACAAGGAA 
ATTACTTTTT CCATCTCGGG AAAGTATGTT TACGGAAGTC TCCGCTATGA GTCGGGCGTT 
CACCGCGTTC AACGTGTTCC TGAAACGGAG GGCTCAGGCC GCATTCACAC AAGTGCCGTA 
ACCGTTGCGG TTTTGCCCGA AGCCGAAGAA ACCGAAATCG AAATCAATCA AGAAGATTTG 
CGTATTGATG TTATGCGTGC AGGCGGCCCG GGCGGTCAGT GTGTTAATAC CACGGACTCG 
GCAGTCCGCA TTACCCACAT ACCCACCGGC CTTGTCGTTA TTTGTCAGGA CGAAAAAAGC 
CAGATTAAAA ATAAGGCAAA GGCTATGCGT GTTTTGCGAA GCCGCCTTTA TGATTTGGAA 
GAAAGTAAAA AGCAGGCAGA ACGGGCTCAA AACAGAAAAA GTCAGGTCGG CTCCGGCGAC 
CGCTCCGAAC GTATCCGCAC CTATAACTTT CCGCAAAACC GCGTAACCGA TCACCGCATT 
AACTTAACCC TTTATAAATT GGATGCGGTC ATGCAGGGTT CTCTCGACGA ATTAATCGAT 
GCCCTCTGTA TCGCCGCCCG CGAAGAAATG ATGAAGGCCG CAGATCATCA CTTGGAGCAT 
AAATAA 

 

Protein sequence

MKERLDNLRK RLVEVEKEVE NPNLIKDVAK YKETMREHSY LSKLMEEYDN YLSIEKQIED 
SKLLIQEESD AELKEMAREE LHSLEAAFEK SEADLKMLLI PPDPLEEKNI IMEIRGGTGG 
DEAALFAADL FRMYTHYAEM KNWKYEVLSL NETELGGYKE ITFSISGKYV YGSLRYESGV 
HRVQRVPETE GSGRIHTSAV TVAVLPEAEE TEIEINQEDL RIDVMRAGGP GGQCVNTTDS 
AVRITHIPTG LVVICQDEKS QIKNKAKAMR VLRSRLYDLE ESKKQAERAQ NRKSQVGSGD 
RSERIRTYNF PQNRVTDHRI NLTLYKLDAV MQGSLDELID ALCIAAREEM MKAADHHLEH 
K