Gene TDE2460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2460 
Symbol 
ID2739645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp2486123 
End bp2487289 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content45% 
IMG OID637161352 
Productaminotransferase, class V 
Protein accessionNP_973058 
Protein GI42527960 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0520] Selenocysteine lyase 
TIGRFAM ID[TIGR01977] cysteine desulfurase family protein 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0711666 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGC GTATCTTTTT AGACAATGCG GCCGGAGCCT TTCCTAAGAC ACCCGGTCTC 
GATCAAGCTC TTGCGATGGC ATTAAATATG GGAACGGGAA ATATTAACCG CAGTACCTAC 
ACCGAAACCG AGGAAGCAGG GCTTGCCGTC ATCGAAACAA GAGAACTTTT ATGTAAGCTC 
TTTAATTTTC AGCCGGCAAC CCATGTTATT TTTACATCGG GAGTTACGGC AAGTCTAAAC 
TATATTATCA AGGGATTTCT CAAATCGGGC GACAGAGTTT TAACAAGCTC CTTTGAACAT 
AATGCCGTAA TGCGCCCTCT GGTTCAAATG GAAAAAATAG GCGTAAAGAT TGACCGCGTT 
CCTGCAATCT TAAAAAACGG AGGAACCTTT GTAGATACAT CCTTAATCGA ATCTATGATA 
AGGCCTGAAA CCCGCCTTGC CGTTTTTTCA CATGCTTCAA ATGTAACGGG CTTTATTCAA 
CCGATAGAAG AAATTGCCTC AATCTTAAAA AAGCACAATA TTCCTTTAGT AATAGACGGT 
GCCCAAAGTG CAGGCCACAT TCCCGTCGAC CTTACACAAT TAAACCCGGC AGCCTTTTGC 
TTTACGGGAC ATAAGGGGCT ACTCGGCCCC CAAGGAACGG GCGGCATCTT ATTCGATAAG 
GATTTTGCAA AAGAGGTTGA GCCCCTCATC ACAGGCGGAA CAGGAAGCGC ATCCGATTCG 
GAAGAAACTC CCTCCTTTAT GCCCGATAAA TTCGAAGCCG GAACTCAAAA CATAATCGGA 
ATTGCAGGTC TTCACCACAG CCTGAAATGG CTGGATGCTT TCGGAATTCA AAACATTCAT 
AAGCGAGAAC AAAAATTGCT TAAACTATTT TTGGACGGAA TAAAAGGCCT TCCGATAAAA 
ATAGCGGGAG GAGAATCAGC CGAAAACAGG GTCGGAATTG TTTCGATAGA CTTTTCCGAA 
TTTATGGACA ATGCTGAAGC CGGTGCCTCT CTCGAAGAAA AATACGGCAT CCTTACCCGC 
TGCGGCCTCC ATTGTTCGCC TTCGGCTCAT AAGTCCATCG GCACCTTTCC GCAAGGCACG 
GTAAGATTTT CGACAGGCCC CTTTACAATA GAAGAAGAAA TTGAAACGGC AATAAGGGCA 
ATAAAGGAGC TTTGCCCAAG GGCTTAA
 
Protein sequence
MKKRIFLDNA AGAFPKTPGL DQALAMALNM GTGNINRSTY TETEEAGLAV IETRELLCKL 
FNFQPATHVI FTSGVTASLN YIIKGFLKSG DRVLTSSFEH NAVMRPLVQM EKIGVKIDRV 
PAILKNGGTF VDTSLIESMI RPETRLAVFS HASNVTGFIQ PIEEIASILK KHNIPLVIDG 
AQSAGHIPVD LTQLNPAAFC FTGHKGLLGP QGTGGILFDK DFAKEVEPLI TGGTGSASDS 
EETPSFMPDK FEAGTQNIIG IAGLHHSLKW LDAFGIQNIH KREQKLLKLF LDGIKGLPIK 
IAGGESAENR VGIVSIDFSE FMDNAEAGAS LEEKYGILTR CGLHCSPSAH KSIGTFPQGT 
VRFSTGPFTI EEEIETAIRA IKELCPRA