Gene TDE2297 details

Gene Information

• Locus tag: TDE2297
• ID: 2740262
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 2336429
• End bp: 2337109
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637161186
• Product: TPR domain-containing protein
• Protein accession: NP_972897
• Protein GI: 42527799
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATTCCG AATTAAAAGA GGGTGTAAAC CTATATAACA AAAAAGACTA TCAAGAAGCT 
TTAGTTTTCT TTTTAAGTGT AAGCACTGAA GATGTTCTTA TAAAAATCGA AATAAACTAT 
TATATAGGAC TAATATATTC CCGCTTGTCG GAGTATGAAC AGGCTCTTGA ATACCTTGAG 
CAGGTAGTAA CTGCAAGCAA GGATATTGCA AAAGTTTATC AATGCAGATT GATATTAGCC 
TTTATCTATG CAAATACGGG CCGAACCAGA CTTGCAGAGT TTGAGCTTTC AAAACTTATC 
GAAGCCGGTT ATGAGTCGGT ACAGGTTTTT TCTTCATTGG CTTATGTTTA TTATGAACAC 
CACGAAATCG AAAAGGCCAT CGACTATTAT GAAAAAGCCT TAAAAACCGC TCCCGAAAAC 
AGCACGGCCT TAAACGGCCT GGCCTATATC TTGGCCGAAA CGGATAGAGA TCTGACACGC 
TCCTTGCTCC TCTGCAAAAA AGCCGTAGAA AAACAGCCCG AAAATCCGGC TTATTTGGAT 
TCGATGGCTT TAATCTACCA TAAGATGAAC CTCCCTTCGG AAGCTAAATC CTATATTACT 
CGAGCTAAAG AAAAATTACC CGATAATAAG ATTATACTCA AACACTTTGA AATGATAAGT 
TCTGATGCAC GGGAGGCTTA G 

 

Protein sequence

MYSELKEGVN LYNKKDYQEA LVFFLSVSTE DVLIKIEINY YIGLIYSRLS EYEQALEYLE 
QVVTASKDIA KVYQCRLILA FIYANTGRTR LAEFELSKLI EAGYESVQVF SSLAYVYYEH 
HEIEKAIDYY EKALKTAPEN STALNGLAYI LAETDRDLTR SLLLCKKAVE KQPENPAYLD 
SMALIYHKMN LPSEAKSYIT RAKEKLPDNK IILKHFEMIS SDAREA