Gene TDE1914 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1914 
SymbolruvB 
ID2740412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1930979 
End bp1932010 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content52% 
IMG OID637160800 
ProductHolliday junction DNA helicase RuvB 
Protein accessionNP_972517 
Protein GI42527419 
COG category[L] Replication, recombination and repair 
COG ID[COG2255] Holliday junction resolvasome, helicase subunit 
TIGRFAM ID[TIGR00635] Holliday junction DNA helicase, RuvB subunit 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00218707 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGATG ATTTTGAGGT AGTGCGTCCC GAAGAGCAGG CCGGGGACGA AAAGGACAGA 
GATCTTCGTC CCCGCTCTCT TGTAGACTTT CAGGGGCAGA CAAAGGCAAA AGAAAATCTT 
TCCGTTTTTA TAAAGGCTGC CCGCGAAAGG GGAGAAAGCT TAGATCATCT TTTTTTGATA 
GGTCCGCCGG GATTGGGAAA AACAACCCTT GCCCAGATTA CGGCCAACGA ACTCGGTGTC 
GATTTTAAGG TTACGGGGGC TCCCGCCCTC GATAAGCCCA AGGATTTGGC AGGTATTCTT 
ACTACCTTGA CGGAACGCTC CGTATTCTTT ATAGACGAGA TTCACCGTTT AAAGCCGGCC 
ATCGAAGAGA TGCTTTATAT CGCAATGGAA GACTACGAAC TTGACTGGAT AATAGGGCAG 
GGGCCGGGAG CCAGAACCGT GCGTATTCCG ATTCCGCCTT TTACCCTTGT CGGAGCGACC 
ACGAGGGCAG GCATGGTTTC AAGCCCCCTT ATAAGCCGCT TCGGTATTGT GCAGCGTTTT 
GAATTTTACA GCCATGAGGA GCTTGCCTCA ATTATAAGCC GCTCCGCTTC AATCCTCGAA 
ATCGAAATAG AAAAGAAGGC TGCCATTGCC TTAGCCCGCT GTTCCCGCGG AACCCCAAGG 
GTAGCAAACC GCTTATTGCG GCGTATGAGG GACTTTGCCC AAGTTGCAGG CAAAAGCTCG 
ATTGACGAGA TGACGGTTGC TGCAGGCCTA AAGCAGCTAA ACATCGACGG CCTCGGCCTT 
GAAACCTATG ACAGGCAGAT ACTCCGCTCC ATTATCGAAA ATTACTCGGG CGGCCCCGTC 
GGCGCCGAAA CCCTTGCAAT TTCTATAGGA GAGTCTCAGG ATACCTTAGA GGATTATTAC 
GAACCCTACC TTATCCAGTC GGGCCTCCTT CAGCGCACTC CCCGCGGCCG AATGGTTACG 
CTTAAAGCAT ACGAACACCT CGGCCTAAAT CCGCCTAAAC TTGGCGATGG GCAAGAGGGG 
CTCTTTGATT AA
 
Protein sequence
MSDDFEVVRP EEQAGDEKDR DLRPRSLVDF QGQTKAKENL SVFIKAARER GESLDHLFLI 
GPPGLGKTTL AQITANELGV DFKVTGAPAL DKPKDLAGIL TTLTERSVFF IDEIHRLKPA 
IEEMLYIAME DYELDWIIGQ GPGARTVRIP IPPFTLVGAT TRAGMVSSPL ISRFGIVQRF 
EFYSHEELAS IISRSASILE IEIEKKAAIA LARCSRGTPR VANRLLRRMR DFAQVAGKSS 
IDEMTVAAGL KQLNIDGLGL ETYDRQILRS IIENYSGGPV GAETLAISIG ESQDTLEDYY 
EPYLIQSGLL QRTPRGRMVT LKAYEHLGLN PPKLGDGQEG LFD