Gene TDE1886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1886 
Symbol 
ID2739115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1907172 
End bp1908578 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content39% 
IMG OID637160772 
ProductMiaB-like tRNA modifying enzyme 
Protein accessionNP_972489 
Protein GI42527391 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01579] MiaB-like tRNA modifying enzyme 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000824769 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATT TTTTTTCGGT TAGAATAGAA ACGCTCGGTT GCCGCTTAAA TCAGGTAGAA 
TCCGAGGCTC TTGCCGTCCG TTTTGCCGAA TGCGGTTTTG ACGTGTTTTC AAAAGAAGCA
GAGACTTCAA TTTTGCCTGT AAAACTGTGT ATTGTAAATA CCTGTACGGT TACGGGAAAG
GCGGAACAAA AAGCCCGCCG TCTTATCCGG CTTTTACTAA AGGAGCATGA AGAGTCTGTC
ATCCTTGTTA CAGGCTGCTA TGCAGAACTT GAAGCCGATT CTATCGAAAA AATAAATAAA
AGAATTATAG CCTTTTCGGG CAAAAAAAAA GATGAGCTTG ATGGACTTCC TCAGTTTTTA
AAAGATTCCT GCCTTAAAAA TAAAGATTTA AAAGAAGATA CCGTTAATCT TAAAAAAAAT
CTTCTTATTT TTCGAAATGA AATATATGCA AAAGAAGATC AACAGGATAA ATCTTTTTTG
CTAAAGGAAA CGGAAAGAAG AAAGTCAATG TTTAAGCTGA GCTCTCCCGT TTTTGTTTTT
CATTCCAGAG CCAGTTTAAA AATACAAGAC GGATGTAATA ATGCTTGCGC CTATTGCAGA
ATAAGGCTTG CACGCGGTAC TTCCGTTTCC CTGCCTGCTG AAGAAGCCGT AAGGCGGATA
GTTCAAATAG AAAAAAACGG AGCCGCAGAG GTTGTTTTGT CGGGTGTAAA TTTATCCCAA
TATAGGGACG AAACCTATGG AGGCTTTGCG AATCTTTTGG CCAAGCTTTT GGAAAATACA
AAAAAAATAA GGCTCCGTAT TTCGAGCATG TATCCCGAAT GTGTAGATGA CGGCATTTTA
GAAATTGTAG CAAATAAAAG GATTTGCCCT CATTTTCATC TTTCGATACA GTCGGGAAGC
GATAAAATTT TAAAGGCTAT GAATAGGCCC TATAGGGAGG CCGACATCAG AATGGCGATA
AATAATTTGC GCAAGGCAAA GGATAATCCT TTTATCGGAT GCGATATTAT TACCGGTTTT
CCTTCCGAGA CGGAAGAGGA TTTTTTACAA ACATTTAAGA TGTGTGAAGA TTTAAAGATT
CCCGGTATCC ATGTTTTTCC TTTTTCGGCC CGCCCGGGAA CAAAGGCTTT TTCGATGAGA
CCTAAGGTTC CTGAAAGAGA AGCAGGTAGA AGGGCTTCGC TTCTTTCGGA ATTGAGCGGA
AAAAACTATC AAAGTTATTT GGCCTCTTGT AACGGAAAGT TGTTTTTTGG TGTTATCGAA
AAACCTCAAA ACAATGAGGA TTTGAGGATT GTAACCGAAA ATTATCTAAG TCTTCCTTTA
GTAGTGAACA AGAAAGCCGA AAACTATAAG GGCGGAGAGG GTCTTTTTGT TGTCATAAAG
GATGGAAATG CATATCTTGC GGATTAA
 
Protein sequence
MSNFFSVRIE TLGCRLNQVE SEALAVRFAE CGFDVFSKEA ETSILPVKLC IVNTCTVTGK 
AEQKARRLIR LLLKEHEESV ILVTGCYAEL EADSIEKINK RIIAFSGKKK DELDGLPQFL
KDSCLKNKDL KEDTVNLKKN LLIFRNEIYA KEDQQDKSFL LKETERRKSM FKLSSPVFVF
HSRASLKIQD GCNNACAYCR IRLARGTSVS LPAEEAVRRI VQIEKNGAAE VVLSGVNLSQ
YRDETYGGFA NLLAKLLENT KKIRLRISSM YPECVDDGIL EIVANKRICP HFHLSIQSGS
DKILKAMNRP YREADIRMAI NNLRKAKDNP FIGCDIITGF PSETEEDFLQ TFKMCEDLKI
PGIHVFPFSA RPGTKAFSMR PKVPEREAGR RASLLSELSG KNYQSYLASC NGKLFFGVIE
KPQNNEDLRI VTENYLSLPL VVNKKAENYK GGEGLFVVIK DGNAYLAD