| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1870 |
|---|
| Symbol | |
|---|
| ID | 2740059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 1892746 |
|---|
| End bp | 1893582 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 637160757 |
|---|
| Product | CAAX amino terminal protease family protein |
|---|
| Protein accession | NP_972474 |
|---|
| Protein GI | 42527376 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000233024 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACA ATATTAAAAA AGCCTTTTTA AATTTTTGGT GGCTTTCAAG CATACTCTTA
TTTTTAATAC TTTGGAAACT TGTGCAAATA TTAAATCCTG ATATGTCTAT ACCGGATTTA
AAAAAAAGAT ATTTGTATGG AATAATAGTT ATTGTAGATT TGTATTGGGT TGTTTTTTGT
TTTAAAATAA ACAGTATTAA TGTTAAAGAA TATTTTAAAT TTAAAAATCC TAAGTTTCTT
TTAATTTTAA AATATACTTT GATTGTTTTT GCAATAAGTG CAATTTATTA TCAGTTTAAT
ACACTTATTC TGGATATAAA ATATTCTTTT AATTTTTTCC AAGAAAACAT GGGGAAAATA
TCCTATTACG ATGTTTTTAG AAATCCGAAT TTGTGGAAGT ATGTTCTTAT TTGTGGAATG
ATATTTGCAC CTGTAGCGGA AGAATTGTTT TTCAGATATT ATATGTATAA TAATTTAAAG
TATAAATATT CGAGTGTCTT TATAGCTAAT ATTATTTCAA GTGTAATATT CGGCTTTTTT
CATATTAGTA TGTATGGATA TGATCTTAAT GCTGTTATGA TGATAAGTAT AGGCGGTATG
GCTCTTGCAT ACTGTTATGA AAAAACAAGA ACCATTTGGA CACCGATGAT TATGCATTCC
CTTCATAACG GTCTTGTATC TTTTGGACAA TGTTTAACTA CCCCTTTTTT TACTATATTG
ACACTTATTT ATATAATTTT AGGCGGCAGT ATTGGAATAA TTGAACTTAT CAAACATCTA
AGAAGGAGAA AACAAAATGC AATACAAACT GATACCTTAC CTCATGTACA AGAATGA
|
|---|
| Protein sequence | MNNNIKKAFL NFWWLSSILL FLILWKLVQI LNPDMSIPDL KKRYLYGIIV IVDLYWVVFC
FKINSINVKE YFKFKNPKFL LILKYTLIVF AISAIYYQFN TLILDIKYSF NFFQENMGKI
SYYDVFRNPN LWKYVLICGM IFAPVAEELF FRYYMYNNLK YKYSSVFIAN IISSVIFGFF
HISMYGYDLN AVMMISIGGM ALAYCYEKTR TIWTPMIMHS LHNGLVSFGQ CLTTPFFTIL
TLIYIILGGS IGIIELIKHL RRRKQNAIQT DTLPHVQE
|
|---|
| |