Gene TDE1606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1606 
Symbol 
ID2740847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1656271 
End bp1656948 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content37% 
IMG OID637160488 
ProductTetR family transcriptional regulator 
Protein accessionNP_972212 
Protein GI42527114 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.912424 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAAACG GAGATTTTGA CCTTACGCAT AAGAAAATTC TGGAATGCGG GAAAAAGATT 
TTCAAAGAGA AGGGCTTTGA AAAAGCCAAT CTGCGGGAAA TCTGTGCGCA GGCGGGTGTT 
ACGACCGGAG CCTTTTACGG TCATTTTAAA GACAAAGAAG CTCTTTTTTC CGAATTGGTA 
CAGCCGGTCA TTACCGATAT AGAGTACCAT TATAGCTTGC TCAAACAACA AAGTTTTACA 
ATGTATAAAA AAGAAACGGT GATCACAAAA CAAACAATCG AATCCATTCT CGATTTAAAA 
TTAAAGGGAG CCGTCGGTAT GGTATCCTAT TTTTTTGATA ACAAAGATAT TTTCGAGCTC 
TTGGCGTTTT GTTCTTATGG AACAAAACAT GAGCATTTTT TAGATGAAAT AATAGAAAAA 
GAAGATGAAA ACCACCTGAA AATCTTGGAG ATGATTCACG GGAAAAAGAA GGCCGCTCAA 
GTAATCACCA AAAAAGGCAT TCACTTACTG AACCATGCAT ACCTGTATGC ACTATCGGAA 
GTTGCCGTTC ATTGCGAAAC AAAAGAAGAA GCCGAACACA ATGCCTATTT AATTGCGGAC 
TTCTTTAATG AAGGCTGGAA AAAAATGCGC ACAGGGCAAT TTAATTATGA ATTAAAACTC 
ATTTATAATT ATGAATGA
 
Protein sequence
MGNGDFDLTH KKILECGKKI FKEKGFEKAN LREICAQAGV TTGAFYGHFK DKEALFSELV 
QPVITDIEYH YSLLKQQSFT MYKKETVITK QTIESILDLK LKGAVGMVSY FFDNKDIFEL 
LAFCSYGTKH EHFLDEIIEK EDENHLKILE MIHGKKKAAQ VITKKGIHLL NHAYLYALSE 
VAVHCETKEE AEHNAYLIAD FFNEGWKKMR TGQFNYELKL IYNYE