| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1582 |
|---|
| Symbol | glgA |
|---|
| ID | 2739779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 1630374 |
|---|
| End bp | 1631849 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637160464 |
|---|
| Product | glycogen synthase |
|---|
| Protein accession | NP_972188 |
|---|
| Protein GI | 42527090 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0297] Glycogen synthase |
|---|
| TIGRFAM ID | [TIGR02095] glycogen/starch synthases, ADP-glucose type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0042939 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA TGATGGTTAC AAGCGAGCTT GTTCCTTTTG CAAAAGTAGG AGGTTTGGCT
GATGCCGTTA CAGCTTTATC AATAGCTCTT GCAGAAAAAA GACATGATGT AAGGGTTGTA
ATGCCTCGTT ATTATAAAAT CGATCGAAAA AACTTAAAGC AAATTCCGGG GGCTATGGCC
GTTCATCTTG GGCCTTATGA ACACTGGGTA GGAGTTTATG AGTCAAATCT GCCTTCTTCA
AAGGTAAAGG TTTATTTTAT AGACCATGAA CAAGCCTTTG GCAGAGATGG CGTTTACGGT
TCAGCTTTTG AACCTGATTT TTCCGATAAT ACGAAAAGAT TTTCACTTTT AGCCCATGCA
GCTTTTCAAG TTTGCAGAAA ACAGGCATGG ATTCCCGACG TTGTACATGC CCATGATTGG
GCTGCGGGCT TGGTACCCGT ACTTTTACGC TTTACAGAAA AAAATACGGA ATTTAAAAAT
ACGGCAAGTG TTTTTACCAT TCATAATATG GGTTACCAAG GTGTTTATTC AAAGCATACC
TTTCCCGACA CAGGCCTTGA TTGGAACGAC TTTTATACTA CAGGCTTTGA AGACTGGGAT
AGAATAAACT TTTTAAAAGC GGCCCTTGTT TCTTCCGATA TGCTTACAAC CGTTTCTCCT
TCTTATGCGG AAGAAATTAA ACGCCCCGAA TTCGGCTTTA GGATGGATGG TATTTTGCGG
TACAGGGAAA AAGAACTGAC AGGAATTTTA AATGGGGTAG ACACCTCAAT TTGGAATCCT
TCAAAAGACG AGTATATTCC TTACCGATAC AATTCTAAAA CCCTTGAGGA AAAGGAAAAA
AATAAATCCG TTTTACAGGA AAGGTTCGGT CTCGAAATAG ATATTTCCGT TCCGGTATTC
GGTATGATAA GCCGATTGGT TGATCAAAAG GGTATTTCAG AGCTTTTCGG ACCCATGTAC
GGTTCAGCCT TTAAGATATG TTCCGATATA AAACTTCAAA TGGTTGTTTT GGGCTCAGGT
GAATCTTGGT GCGAAAAAGA GCTCAATTTT CTTTCACAAA GGCTGCCTAA TTTTAGATGT
TATATAGGCT ATAATGAAGA ATTAAGTCAT TTAATCGAAG CCGGAAGCGA CTTTTTCTTG
ATGCCTTCAA GATATGAACC ATGCGGCTTA AACCAAATGT ATTCCCTCCT TTACGGAACC
TTGCCCATAG TCCGAAAGAC TGGAGGGCTC GCAGATACGG TAGAAAACTA TAATGAAGAA
ACAGGCGAGG GTACGGGTTT TGTGCTTGAC TACTTAAGCC CTCAAAGTAT TTACGATACG
GTCGGCTGGG CAGCTTATGC ATGGTATAAT AAAAAAGATC ACATAAAAAA GATGAGAACC
AAGGCCATGA GTAAAAAGTT CGGATGGAAT ATAGCCGCGG AAAAATATTT AAAAGTATAT
GCCGATGCTA TTGAAAAAAA AGCTTCCATG TTATAG
|
|---|
| Protein sequence | MKIMMVTSEL VPFAKVGGLA DAVTALSIAL AEKRHDVRVV MPRYYKIDRK NLKQIPGAMA
VHLGPYEHWV GVYESNLPSS KVKVYFIDHE QAFGRDGVYG SAFEPDFSDN TKRFSLLAHA
AFQVCRKQAW IPDVVHAHDW AAGLVPVLLR FTEKNTEFKN TASVFTIHNM GYQGVYSKHT
FPDTGLDWND FYTTGFEDWD RINFLKAALV SSDMLTTVSP SYAEEIKRPE FGFRMDGILR
YREKELTGIL NGVDTSIWNP SKDEYIPYRY NSKTLEEKEK NKSVLQERFG LEIDISVPVF
GMISRLVDQK GISELFGPMY GSAFKICSDI KLQMVVLGSG ESWCEKELNF LSQRLPNFRC
YIGYNEELSH LIEAGSDFFL MPSRYEPCGL NQMYSLLYGT LPIVRKTGGL ADTVENYNEE
TGEGTGFVLD YLSPQSIYDT VGWAAYAWYN KKDHIKKMRT KAMSKKFGWN IAAEKYLKVY
ADAIEKKASM L
|
|---|
| |