Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1346 |
Symbol | |
ID | 2739447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 1385359 |
End bp | 1387218 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637160224 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | NP_971952 |
Protein GI | 42526854 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGATC TCGAAAAGAA TCCTGCGATT ATTAAACTTT TGGAATATGC CAAAAGGAAG CGCACAATAG GATTGGGTGA TCTTGATGAT CTACTGCCCG AAGACTTAAT GTCTCCGGAA ACTATACCTG ATATTCTGGA TATTTTGGAA GGTGCCGGCG TTCAAATAAA AAATGAAGGA ATATCCGAAT CCAATTCGGA ATCCGACTCC GATTCTCAGA GCGGCAATGA TGAAGACTAC CGATTATTGG ATGATACATA CGAAGAAGAG GATGACGATA TAAAAAGTCC TTATTCCGAT GAAATCGAGA CTCCATATAT CGAAAAAGAA AAGCCTAGGC ATGAAACGGC AAAAAAACTG GTTAGAACTT CTCACGAAGC CGGAGTTGAC GATCCGATTA AGCTTTATCT TCAAGAGATA GGCAAGGAAG ATCTTTTAAC TGCCGATGAA GAAGTATCTC TTTCAAAAAG TATGGAAGAC GGGGAAGCTA TCATAAAAAA GGTTATAAAA AATTCCGGTA TATTGATTCC AGAGTTTTTT GTAATCGGAC AAAAGGCTTT TTCAAAACTA GATCCCGCTG AGTCCAATAA GCCGCGCAAA GAGTTAAGTG AAGAAATGGC CGAAAAAAAG CGTCTCAAGC AGGTTTATGG GGACAGTCTA CGGAACATAT ATTCCGAAAT TAAACAATAT ATGTCCTTAA AAAAGCACTG TTATGATAGA GAAAGCTTGG AAAGCTTTTT GGAGAGCCCT GAACTTCAAG CTTTGCGAAA GAAGATGTTT AACAGTCTTA AACGTATTCA CATTGAATCG GAAGAAATAG AAAAAATTTC GGACCGCTTT ATTGAAGCTA CCGAAAAAGT GCAGGACTAC CAACACAAAA AAGAAAGAAA AGAAAAACAG CTTGGTATTA AAAGCTATGC CGATTTAAGA AAACTGGGTA AACGGCTTGC AATTCCGAGA GAAAGAGAAA AACTGGAAAA AGAGCTTAAT ATTTCGGCTA ATGAAGTAAA GGATATATAC ACTCAAATTC AGGTCTTGAC CCGAAAAATC CGAAAGATCG AATATGATTT TGAAGCTACT GTAGATGAAG TTATTGATCT CACTTCAGAG ATAAAGAACG GCCAGAGAAT GCTTAAAAAT GCAAAAGATA AGCTGATAAA TGCAAACTTG CGCCTTGTTG TTTCTATTGC TAAGAAGTAC ATCAACAGGG GATTACAGTT CTTTGATCTT GTGCAAGAGG GAAATATCGG GCTTATAAAA GCTGTTGAAA AGTTTGAGTA CAGGAAGGGA TATAAATTTT CTACCTATGC TACCTGGTGG ATAAGGCAGG CTATTACGCG TTCAATATCG GATCAGGCAC GTACGATAAG GGTTCCTGTC CACATGATAG AACAAATAAA CAAGGTAAAC AGGGAATCCC GCCAGCTTAT GCAAAAACTC GGCCGTGAAC CCAATGATGA TGAGATAGCC TTGCAGCTTG GCTGGTCGAT CGAAAAGGTT AAGCAGGTTA AAAATGTTGC AAGGGAGCCT ATCTCTCTTG AAACGCCCAT AGGTGAAGAA GAAGATACGC TCTTGGGAGA TTTAATCGAA GATAAGGGTG TTGAAAATCC TTCAAACAGA ACGGAGCTTA CTCTTTTGCA GGAGCAGCTT GAAATGGTGC TTTCGAGTTT GCCTGAGCGT GAGCAGGAAG TTTTAAAAAT GCGCTTCGGT ATTGAGGGCG GCTATCCTCT TACCCTTGAA GAAGTAGGCT TATATTTCGA CGTAACGCGT GAAAGAATAA GGCAAATAGA AGCAAAGGGA TTAAGACGGC TGCGCCATCC TAAACGTAGT AGAAAATTAA AAGATTATCT TGATAATTGA
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Protein sequence | MTDLEKNPAI IKLLEYAKRK RTIGLGDLDD LLPEDLMSPE TIPDILDILE GAGVQIKNEG ISESNSESDS DSQSGNDEDY RLLDDTYEEE DDDIKSPYSD EIETPYIEKE KPRHETAKKL VRTSHEAGVD DPIKLYLQEI GKEDLLTADE EVSLSKSMED GEAIIKKVIK NSGILIPEFF VIGQKAFSKL DPAESNKPRK ELSEEMAEKK RLKQVYGDSL RNIYSEIKQY MSLKKHCYDR ESLESFLESP ELQALRKKMF NSLKRIHIES EEIEKISDRF IEATEKVQDY QHKKERKEKQ LGIKSYADLR KLGKRLAIPR EREKLEKELN ISANEVKDIY TQIQVLTRKI RKIEYDFEAT VDEVIDLTSE IKNGQRMLKN AKDKLINANL RLVVSIAKKY INRGLQFFDL VQEGNIGLIK AVEKFEYRKG YKFSTYATWW IRQAITRSIS DQARTIRVPV HMIEQINKVN RESRQLMQKL GREPNDDEIA LQLGWSIEKV KQVKNVAREP ISLETPIGEE EDTLLGDLIE DKGVENPSNR TELTLLQEQL EMVLSSLPER EQEVLKMRFG IEGGYPLTLE EVGLYFDVTR ERIRQIEAKG LRRLRHPKRS RKLKDYLDN
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