| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1331 |
|---|
| Symbol | nrdD |
|---|
| ID | 2741065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1366008 |
|---|
| End bp | 1368134 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637160208 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | NP_971937 |
|---|
| Protein GI | 42526839 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0843156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGAAA AAACTACAAA TCAAACGGTT TTTCCTGAAT GGAAGTCCTT TTTAGGGACA
ATGGAGAAGG CAAAGCCTGA AATTTTGCGC TCGGTAGTAA AACGTTCGGG AGAAATTGAG
GCGTATAATC GAAAAAAAAT AGAACAGGCA ATCAATAAGG CTATAACCGC AGTTGAAGGC
AGCCCAAATG ATGAAAAAGC TGTGTTTTTA ACGGACAAGG TCGAAGAAAA GCTTAAAAAT
ATTATGGCAT CCCGTTATGC TCATTCTATT CCGGCAATAG AAGAGATTCA GGACGTTGTA
GAGCTTGTTT TAATTGAACA GCAGGAAGCC CGTCTCGCAA AGGCCTATAT CCTTTACAGG
GCAAAGAGGG AGGCCGTACG GGATGCGGAA AGCCTCATGC TGAATATAAA CAGCACCATG
GACGGATATT TAAGTCAATC CGACTGGCGC GTAAAAGAAA ATGCCAACGT AAACTTTTCT
TTAGGCGGTC TTATTCTCCA TAACTCAGGT ACTATTACGG CAAACTATTG GCTTAAAAAT
ATTTATACAC CTGCCATTGC CGAAGCCCAT ATAACTGCAG CCTTTCATAT TCATGACCTT
TCAATGTTTT CAGGCTACTG TGCAGGCTGG TCCCTTAGGC AGCTTATCCA TGAGGGCTTA
GGCGGGGTTC CCGATAAGAT TACCTCAAAG CCTCCCAAGC ATTTATCGAC ACTTATTCAG
CAGATAGTCA ACTTTTTAGG CATTATGCAG AACGAGTGGG CTGGAGCTCA AGCCTTCAGC
TCCTTTGACA CATATTTGGC TCCCTTTGTA AAAAAAGATA AGATGAGTGA AGCCAACGTA
AAACAGTGCC TTCAAAGCTT TGTTTACGGT GTAAACACTC CCAGCCGCTG GGGTTCTCAG
GCTCCATTTA CGAATATAAC CTTGGACTGG GTATGTCCGC CCGACCTTGC AAACCAAAAG
GCTGTTGTCG GGGGCGAAAC ACAGGATTTT ACATACGGTG ACTGTCAAAA AGAAATGGAT
ATGATAAATA AGCTCTTTAT TGAACTTATG CTTGAAGGAG ATGCCGCAGG ACGAGGTTTC
CAATATCCAA TTCCCACTTA CAATATAACC TCCGATTTTG ACTGGTCAAG TCCGAATGCA
AAACTGCTTT TTGAGATGAC TGCCCGATAC GGTACGCCCT ATTTTCAAAA CTTTATAAAT
TCCGACCTAA ATCCCGGGGA TGTGCGTTCC ATGTGCTGCC GTCTTCAACT CGATAAAAGG
GAATTGCGTA AAAGAGGAGG CGGACTTTTC GGCTCCGATG AGTTTACAGG ATCCATAGGG
GTAGTTACGA TAAATATGCC TCAAATCGGG TACCTGTCAA AAACCGAAAA GGACTACTTT
GACCGCTTGG ACTACCTCAT GGACATCGCA AAGCAAAGCC TTGAGATAAA GCGGAAGGTA
ATCGAAAAGC TACTGGAGGG AGGCCTTTTC CCGTATACAA AAAGGTATTT ACATCATCTA
AACAATCACT TTTCGACTAT AGGAATTTGC GGTATGAACG AGTCCTGCCT AAACTTTTTG
GGTGAAGATA TTGTAAGCCC GAGGGGAAAG GCCTTTGCCG AAAAGGTCTT AACCTATATG
AGAAACCGCC TTGCAGACTT CCAAGAAGAA ACGGGCAGCT TATTCAATCT TGAAGCAACC
CCGGCTGAAA GTACTTCTTA CAGACTGGCT CGCCACGATA AAAATCAGTT CCCCGATATA
ATAAGTTCGG GAGATGCCGA GCCTTATTAC ACCAACTCAA GCCAGCTTCC CGTTGCCTAT
ACTACCGATG TTTTTGAAGC CTTGGATCAT CAAGAAAGTT TACAGCGTAA GTATACGGGA
GGCACGGTTT TTCACATATT CTTGGGTGAA TCTATCAAGG ATTGGGAATC TTGCAGGGAT
TTGGTTAAGG CTGTTGCAAA CAATTACCGT ATTCCCTATT TTTCGATTTC GCCGACATTT
TCGATATGTC CTGTTCACGG CTATCTTGAG GGCGAACATT TTGAGTGCCC TTATTGCAAG
CGAGAAAAAC AGGCAAAACT TGAACTGAAA CTGGCCGAGC TTGAAAAAGA AAAGGCCGAG
GTCTTGAGTG TTTCTTCTAA GATTTAA
|
|---|
| Protein sequence | MEEKTTNQTV FPEWKSFLGT MEKAKPEILR SVVKRSGEIE AYNRKKIEQA INKAITAVEG
SPNDEKAVFL TDKVEEKLKN IMASRYAHSI PAIEEIQDVV ELVLIEQQEA RLAKAYILYR
AKREAVRDAE SLMLNINSTM DGYLSQSDWR VKENANVNFS LGGLILHNSG TITANYWLKN
IYTPAIAEAH ITAAFHIHDL SMFSGYCAGW SLRQLIHEGL GGVPDKITSK PPKHLSTLIQ
QIVNFLGIMQ NEWAGAQAFS SFDTYLAPFV KKDKMSEANV KQCLQSFVYG VNTPSRWGSQ
APFTNITLDW VCPPDLANQK AVVGGETQDF TYGDCQKEMD MINKLFIELM LEGDAAGRGF
QYPIPTYNIT SDFDWSSPNA KLLFEMTARY GTPYFQNFIN SDLNPGDVRS MCCRLQLDKR
ELRKRGGGLF GSDEFTGSIG VVTINMPQIG YLSKTEKDYF DRLDYLMDIA KQSLEIKRKV
IEKLLEGGLF PYTKRYLHHL NNHFSTIGIC GMNESCLNFL GEDIVSPRGK AFAEKVLTYM
RNRLADFQEE TGSLFNLEAT PAESTSYRLA RHDKNQFPDI ISSGDAEPYY TNSSQLPVAY
TTDVFEALDH QESLQRKYTG GTVFHIFLGE SIKDWESCRD LVKAVANNYR IPYFSISPTF
SICPVHGYLE GEHFECPYCK REKQAKLELK LAELEKEKAE VLSVSSKI
|
|---|
| |