Gene TDE1271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1271 
Symbol 
ID2740564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1305119 
End bp1306090 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content35% 
IMG OID637160149 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionNP_971878 
Protein GI42526780 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0320538 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTCTG AGTACCTACT GGAAACAATA AATTTAAGCA AGCATTTCTC TGAATCAAAA 
AGCCTTTTTA ATTGGAACCC TAAATCGGTA AAGGCTGTAA ACAATGTAAA TATCAAAGTT 
AAACCTAAAG AGGTTCTTGG CTTGGTTGGA GAATCAGGCT GCGGAAAAAG TACACTAGGC 
AGAACTATAC TCCGTCTATT ACCTGCAACA AGCGGAAAAA TATTATATAA AGGCGATGAC 
ATTCTAAAAT ATAATAATAA ACAGATGTTT GAGCTCAGAA AAAAAATGCA AATTATATTT 
CAAGATGTAT ACAGCTCTTT AAATCCGCGA ATGACTGTCG GTGATATTGT TACAGCTCCC 
TTAAATGTTT TTAAAGAGGG AGATAAAAAA TATAGGCAAA ATAAAGTTAT AGAAATGCTC 
GAAGAAGTAG GCCTTAGAGC ACAATATTTA AACCGATTCC CTCATGAATT TTCGGGAGGT 
CAGAGACAAA GGATTGTAAT TGCCCGTTCT TTAATAATGA ATCCGGAACT GGTGATTTGT 
GACGAACCTG TTTCGGCACT TGATGTGTCG GTAAGAGCTC AAGTTTTAAA TTTAATGAAA 
AAACTTAAAG AAGAAAAGGG GCTTACATAT ATTTTTATAT CGCATGATTT AAGTGTAGTA 
AATCATATCA GTGATAGAAT AGCAGTTATG TATCTTGGGA ATGTAATTGA ATTGGCAGAA 
CGGGACGAGT TATTTAAAAA TGCTTTTCAT CCATATACTA AAGCTCTTTT ATCTGCCGTT 
CCCATAGCAA GTACAGAAGC TAGAAAAAAT AGAATTATTT TAAAAGGGGA TATTCCTAAC 
CCCTATGATC CGCCAAAAGG ATGTTGTTTT AATACACGAT GTCCAAAAGC TACTCAAAGG 
TGTAGAGAAG AAATTCCGGA ATTAAAAACG CTGGCCAGTG ATCATTTATG TGCCTGTTTT 
TATCCTGATT AA
 
Protein sequence
MSSEYLLETI NLSKHFSESK SLFNWNPKSV KAVNNVNIKV KPKEVLGLVG ESGCGKSTLG 
RTILRLLPAT SGKILYKGDD ILKYNNKQMF ELRKKMQIIF QDVYSSLNPR MTVGDIVTAP 
LNVFKEGDKK YRQNKVIEML EEVGLRAQYL NRFPHEFSGG QRQRIVIARS LIMNPELVIC 
DEPVSALDVS VRAQVLNLMK KLKEEKGLTY IFISHDLSVV NHISDRIAVM YLGNVIELAE 
RDELFKNAFH PYTKALLSAV PIASTEARKN RIILKGDIPN PYDPPKGCCF NTRCPKATQR 
CREEIPELKT LASDHLCACF YPD