Gene TDE0987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0987 
Symbol 
ID2739064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp1014181 
End bp1015137 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content44% 
IMG OID637159860 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionNP_971596 
Protein GI42526498 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000207029 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAAG AACCTATTTT TGAAGTTGAA AATTTAGTAC AGGAGTTTTC GCAGGGCAGG 
TACAGCAAGG CTGTAGTTCA TGCCTTAAAC GGTGTAAGCC TTTCGGTTTA TGAAGGCGAA 
ACTCTCGGTT TGGTAGGAGA GACTGGCTGC GGTAAAAGTA CTCTTTGCCG TGCTATGATG 
CGTCTTTATA AACCTACTTC CGGCGTAATA AAATATAGGG GAAGGGATAT TACCTACCTC 
AAAGAACGAA AATTAAAAGA CGTACGCAGT GATGTTCAGA TGATATTCCA AGATCCTGCA 
GAGTCAATGA ATTCCCGTAT GAACGTAGGC TACGTAATCG AAGAGCCTCT AATTATACAG 
ACAAAGATGA CTGCCGATGA GCGCAAGGCA AAGGTTTTGC AGCTTTTAAA GGACGTAGGT 
CTTCCTGAAG ATGCCTACTA TAGATATCCG CATGAATTTT CAGGCGGACA AAGACAGAGA 
ATAGCTATTG CCCGCGCCTT GGCTGTAGAT CCCAAAATCG TAGTCTGCGA TGAACCTGTA 
AGTGCTTTGG ACGTTTCCGT TCAGTCGCAG GTTTTAAACC TTCTGCTCGA TATGCAGGAA 
ACAAGAAAGC TGACTGTTAT TTTTATTTCT CACGGCTTAA ACGTTGTTAG GCACATGTCC 
GACAGAATTG CAGTTATGTA CTTGGGTTCC ATTATGGAGC TTGCTACATC TTCTGTCATA 
TACTCCGATC CTGTCCATCC GTATACTCAG GCCCTTATCG CCGCTATACC GGATACGGAT 
CCGTCAAAGA GACAAAAACG AATTCCCTTT ACCGGTGAAA TTCCTTCACC GATCAACCTG 
CCTTCAGGCT GCCCATTCCA TCTAAACTGT ACAAAGAAGA TAGATAAATG CTCTGTTGAG 
AAGCCTGTTC TTAGGGACAT CGGTGACGGA CACATGTGTG CATGTCATCT TGTTTAA
 
Protein sequence
MSKEPIFEVE NLVQEFSQGR YSKAVVHALN GVSLSVYEGE TLGLVGETGC GKSTLCRAMM 
RLYKPTSGVI KYRGRDITYL KERKLKDVRS DVQMIFQDPA ESMNSRMNVG YVIEEPLIIQ 
TKMTADERKA KVLQLLKDVG LPEDAYYRYP HEFSGGQRQR IAIARALAVD PKIVVCDEPV 
SALDVSVQSQ VLNLLLDMQE TRKLTVIFIS HGLNVVRHMS DRIAVMYLGS IMELATSSVI 
YSDPVHPYTQ ALIAAIPDTD PSKRQKRIPF TGEIPSPINL PSGCPFHLNC TKKIDKCSVE 
KPVLRDIGDG HMCACHLV