Gene TDE0903 details

Gene Information

• Locus tag: TDE0903
• Symbol: pcrA
• ID: 2739943
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 920368
• End bp: 922356
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637159777
• Product: ATP-dependent DNA helicase PcrA
• Protein accession: NP_971513
• Protein GI: 42526415
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000149159
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGAAT TTACTGAAGG TCTTAATCCC GAACAGTTTA AAGCCGTTAC TACTATTAAC 
GGGCCGGTGC TTATAATAGC GGGAGCCGGT TCGGGGAAAA CACGCGTTAT CACTTTTAGA 
ATTGCACACA TGCTCGACAA GGGAATCCCT CAGTCTCAGA TTTTGGCTCT TACCTTTACC 
AACAAGGCTG CCAAGGAAAT GGCCGATCGG GTAAAAGAGC TTACCGGTAA AAAACTTCAA 
AATCTGACTG TCAGCACATT TCACGCTTTT GGAGTTAAGG TTCTGCGTTC CCATATCGAT 
AAAATAGGCT GGAGAAGTAA TTTCAGTATT TATGACGAAA CCGACCGCAA TCAGTTAATT 
AAAGAATGCG GAAGAGAACT TAAATTCTCG GCAGATGCCT TGGATGTTTA CAAGGTAGGC 
ATTCTTTTTT CCAATATCAA AATGGGAAGA AAGGATTGGA CAAACGAGCA TGATTCGTAC 
AAGGCTCTTT ATAAAGAATA TCAGGATGGG CTTAAACTTT ATAATGCAGT AGACTTTGAC 
GACCTTATAA TGCTTCCCAT AAAAATATTT AAAGAACATC CCGAAGTCTT GGCGGAGTAC 
CGCGAAAGAT ACCGATATAT AATGGTTGAC GAATTTCAGG ATACCAGCAC ACAGCAATAT 
AATTTTATGA AGCTCATCGC CGACAAAAAT ATCTGTGTAG TAGGCGATGA CGATCAATCT 
ATTTATTCTT GGCGGGGTGC CAGTTTTGAA AATATCCGCA ACTTTGAAAA AGACTTTCCC 
GAAATGATCG AAATAAAACT TGAACAAAAC TATCGTTCAA CAGGGACAAT TTTGGCTGCC 
GCAAACGGTG TAATTTCTCA TAATGTAAAC CGCAAGGTTA AAGCTCTTTG GTCAGAAAAA 
GACTCGGGGC GCCCCATCGA AATTTTTATT CCCGAAAACG AGGCGGCGGA AGCCGATTTT 
ATTTCGGACA TGATTTTAAG CTTAAAGCAA AGAGAAGGTT TTAAGTATTC CGACTTCGGA 
GTTTTAATCC GTGCCAACAG TTTAAGCCGC CCATTGGAAG AATCCTTTTT GGAAGTAAAC 
ATTCCGTATA GAATGTCGGG GGGGACAAGT TTTTTTCAGC GGAAGGAAAT AAAGGACCTT 
ATAAGCTATC TGCGTGTTGT TGCAAACCCC GACGATGATG TAAACCTTCT GCGCATTATC 
AACACGCCGA GGCGCGGCAT AGGCAAAAAA ACTCTTGAAA CACTTTCCGC TCTTGCAACG 
GAAAATTCCT GTTCGATGCG GACTGCAATC CGCCTTCTTC TTGAAAACCC GCCTGAAGAT 
ATGAGGGGAA AAAGCATCGA AGATTTAAAA GAATTTGCCG AGCTTATAAG CACACACCGA 
ACCCAGCTTC TTTCTGGGAA GGGCCTTGCC CAAAAGGTTA GAAAACTTTT GGACGACATC 
GCCTATAACG AATACCTTAT CGCCGAATAC CAAAAAAGTG AAAAGGCTGC TCAATTTAAA 
ATGATGAATA TCGAAAGTTT TTTGCACTCG ATGGACGATT GGGAAAACAA TCCCGACAAC 
TTGGACGGAA GTCTCTACGA TTATCTTAAC CGCATTACCC TTTTAACCCG CGATGATACT 
GAAGAAGAAA AAGGCGAAGT AAATATTATG ACCATTCATT CTTCAAAGGG CTTGGAGTTT 
CCTGTGGTTT TTATTGCGGG AGCGGAAGAC GGCCTTATTC CCCATGCAAG GAGTGTCGAA 
GAAAATGACG GAGATGTCGA AGAAGAGCGC CGCCTTTTCT ATGTGGCTAT TACCAGAGCC 
CAGCAAAAAC TTTTTATCAC AAGCTGCAGA CAAAGACGAA AGCAGGGCGG CATAACCGAA 
TGTGCTCCGT CTCCTTTTTT GGATGAGATT CCTGCCGACC TTGTCGAATA CCACGAGCCC 
GATGCCCAAG CCGAAGAAGA ACGCATCGCC GATATCTTCA GCCAAATGAA AAAAAAGTTT 
TCGATGTAG 

 

Protein sequence

MNEFTEGLNP EQFKAVTTIN GPVLIIAGAG SGKTRVITFR IAHMLDKGIP QSQILALTFT 
NKAAKEMADR VKELTGKKLQ NLTVSTFHAF GVKVLRSHID KIGWRSNFSI YDETDRNQLI 
KECGRELKFS ADALDVYKVG ILFSNIKMGR KDWTNEHDSY KALYKEYQDG LKLYNAVDFD 
DLIMLPIKIF KEHPEVLAEY RERYRYIMVD EFQDTSTQQY NFMKLIADKN ICVVGDDDQS 
IYSWRGASFE NIRNFEKDFP EMIEIKLEQN YRSTGTILAA ANGVISHNVN RKVKALWSEK 
DSGRPIEIFI PENEAAEADF ISDMILSLKQ REGFKYSDFG VLIRANSLSR PLEESFLEVN 
IPYRMSGGTS FFQRKEIKDL ISYLRVVANP DDDVNLLRII NTPRRGIGKK TLETLSALAT 
ENSCSMRTAI RLLLENPPED MRGKSIEDLK EFAELISTHR TQLLSGKGLA QKVRKLLDDI 
AYNEYLIAEY QKSEKAAQFK MMNIESFLHS MDDWENNPDN LDGSLYDYLN RITLLTRDDT 
EEEKGEVNIM TIHSSKGLEF PVVFIAGAED GLIPHARSVE ENDGDVEEER RLFYVAITRA 
QQKLFITSCR QRRKQGGITE CAPSPFLDEI PADLVEYHEP DAQAEEERIA DIFSQMKKKF 
SM