Gene TDE0396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0396 
Symbol 
ID2739405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp445952 
End bp446920 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content37% 
IMG OID637159268 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionNP_971010 
Protein GI42525912 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACCG TTTTAAATGT AGAAAAAATA AACATCACAT ATAGAAACAA ACATAAAAGC 
GTGTATGCGG TAAAAGATAT TTCGTTTATG CTGAATCAAG GAGATTCGCT GGGAATTGTA 
GGTGAATCCG GTTCCGGAAA ATCCACATTA GCTATGGGGC TTTTAAAGTT ATTACCCGCC 
CGCAGTACAG CTATTACAGG ATGCGTCGAA TTCGATAAAA AAAATTTATT GGAATTAACC 
GACCGGCAAT ATAACGAACT GCGATGGAAA GAAATCTCTG TTGTGTTTCA AAAATCAATG 
AATGCATTAA GTCCTGTACA TAGAATCAGC GTACAAATAG AAGACATTTA CCGCGTACAT 
TATCCAGACA CTCCGTCCCA GAAAATTAAA GAGAGGGCAT TATATTTATT TTCACTGGTT 
AATCTTTCCA GCCGTGTTTA TAATTTATAT CCTCATGAGC TAAGCGGCGG AATGCTGCAG 
CGCATATCGA TTGCAATCAG TCTATTGTTT TCGCCTAAAC TTTTAATTTT AGATGAAGCT 
ACGACGGCTC TGGACACGGT TACACAGGGA CAAATATTGG ATGAAATAGT TAAGCTCGAA 
ACCGAAATGA ATATGACTCG TATTATGATT ACTCATGATA TAAGTGTTGT TTCGCAATCA 
TGTAATAAAG TAGGAATTAT GTATGCAGGA GAATTAATGG AAATAGGAGC TACGGAAACC 
GTTTTAAAAT ATCCGAAACA TCCTTATACC AAAGCGCTTA TAGAATCCTT TCCCTCCTTG 
TACGGAGAAA AAAAACCGCT TAAATCCATA GAAGGGTTTA TTCCCGATTT ATCGCAGCAA 
TACAAAGGAT GCATTTTTGC TCCGCGTTGT AAGAATGCAA TGGATATATG CAAATCCCAT 
AAACCTCAGA AAACCGAATT TAAAGACGGG GATGTGTATT GTCATCTTTA TGAGGAGGCG 
GCAAAATGA
 
Protein sequence
METVLNVEKI NITYRNKHKS VYAVKDISFM LNQGDSLGIV GESGSGKSTL AMGLLKLLPA 
RSTAITGCVE FDKKNLLELT DRQYNELRWK EISVVFQKSM NALSPVHRIS VQIEDIYRVH 
YPDTPSQKIK ERALYLFSLV NLSSRVYNLY PHELSGGMLQ RISIAISLLF SPKLLILDEA 
TTALDTVTQG QILDEIVKLE TEMNMTRIMI THDISVVSQS CNKVGIMYAG ELMEIGATET 
VLKYPKHPYT KALIESFPSL YGEKKPLKSI EGFIPDLSQQ YKGCIFAPRC KNAMDICKSH 
KPQKTEFKDG DVYCHLYEEA AK